PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548208.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WOX

Protein Properties

Length: 266aa MW: 30380.7 Da PI: 5.9562

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.1	2.3e-21	92	152	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++ +l +++e++V++WFqNrRa+ k+ XP_010548208.1 92 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITVELsqhgQISETNVYNWFQNRRARSKR 152 89***************99************************************97 PP
2	Wus_type_Homeobox	101.5	6.1e-33	91	154	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++k+ XP_010548208.1 91 ARQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKH 154 789***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.48E-19	85	157	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-18	86	159	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.143	88	153	IPR001356	Homeobox domain
SMART	SM00389	6.9E-15	90	157	IPR001356	Homeobox domain
CDD	cd00086	7.74E-14	92	154	No hit	No description
Pfam	PF00046	3.7E-19	92	152	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MMEWDNRQQP TNQNTPNLHR IDVNGGGMYV KVMTDEQLET LRKQIAIYST ICERLVEMHR 60 TLTAQQDLAG GRLGCLYSDP LMPSSGHRMT ARQRWTPTPV QLQILERIFD QGNGTPSKQK 120 IKEITVELSQ HGQISETNVY NWFQNRRARS KRKHHVAASS NNNNNNNGES EVETEVELSN 180 EKRTRPENLF QPQHNINNKA GAGTTHRPTP EDCFQSHDDM NSELHLLGVL SNTREEGEEE 240 EVLAGKMILP ESYNLYDHVE DFGMAG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548208.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548208.1	0.0	PREDICTED: WUSCHEL-related homeobox 13-like
Swissprot	O81788	1e-115	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	D7MCZ4	1e-117	D7MCZ4_ARALL; Homeobox-leucine zipper protein
STRING	XP_010548208.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-105	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]