PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548045.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 288aa    MW: 33725.9 Da    PI: 10.6123
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548045.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.6e-1520112399
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     kv   s  +++++ ++p +f+++ +++      ++l+  +g+sW++ l  +k++g  ++ + GW+eF ++ng+   +fvvF++++r+  +l+vk+
  XP_010548045.1  20 KVIHGSELSSEKMRRIPEEFLRSLSNN-DFAYRVVLKVAWGNSWTIPL--TKNKGNfFMKKCGWEEFLRDNGMGNDEFVVFTHQERM--HLNVKI 109
                     55555667777888*******999655.57889***************..777766366679********************76555..55**** PP

                     E-S CS
              B3  97 frk 99 
                     f+k
  XP_010548045.1 110 FSK 112
                     998 PP
2B350.44e-162062831497
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     + l +p  fa eh   +++s+ ++++d++g++We+++    ++gr++l++GW +F+++ gLkegD ++++l +  + e++++v 
  XP_010548045.1 206 NFLLVPSWFAMEHL--PRKSTRIVIRDSTGKTWEMTC--LYRQGRMTLSAGWVGFAREIGLKEGDWCTLELFN--DNEMHIQVS 283
                     66899*****9995..457889***************..66666799***********************876..445577765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-1614114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-1816113IPR015300DNA-binding pseudobarrel domain
CDDcd100173.56E-1317111No hitNo description
SMARTSM010191.3E-1218113IPR003340B3 DNA binding domain
PROSITE profilePS5086312.87218113IPR003340B3 DNA binding domain
PfamPF023622.3E-1319113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-21188283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-23189283IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.128193286IPR003340B3 DNA binding domain
CDDcd100173.55E-17194284No hitNo description
SMARTSM010191.0E-13196286IPR003340B3 DNA binding domain
PfamPF023621.5E-13205281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKRGSERMLE EDWDAASFYK VIHGSELSSE KMRRIPEEFL RSLSNNDFAY RVVLKVAWGN  60
SWTIPLTKNK GNFFMKKCGW EEFLRDNGMG NDEFVVFTHQ ERMHLNVKIF SKNGMKILKP  120
QEPVTPSQST PRGPKRKRVS KDVKKEEPES EISDVIKRRG GRKPKQAEMQ ENKIMQRRRI  180
VRRATESSPS SEFPRFTIKI KPTYLNFLLV PSWFAMEHLP RKSTRIVIRD STGKTWEMTC  240
LYRQGRMTLS AGWVGFAREI GLKEGDWCTL ELFNDNEMHI QVSKGRPT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548045.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548045.10.0PREDICTED: B3 domain-containing protein At5g18090-like
STRINGXP_010548045.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-56B3 family protein