PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547891.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 280aa    MW: 32155.3 Da    PI: 8.0258
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547891.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.2e-171964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l ++v+q+G+++W+ I++++  gR++k+c++rw++ 
   XP_010547891.1 19 RGHWRPAEDDKLRRLVEQFGPKNWNFISQHLE-GRSGKSCRLRWYNQ 64
                     899*****************************.************96 PP
2Myb_DNA-binding55.21.7e-1771115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++ +
   XP_010547891.1  71 KKPFTEEEEERLLKAHRIQGNR-WASIARLFP-GRTDNAVKNHFHVV 115
                      689*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.0831469IPR017930Myb domain
SuperFamilySSF466891.76E-2818112IPR009057Homeodomain-like
SMARTSM007172.7E-151867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-262072IPR009057Homeodomain-like
CDDcd001675.51E-132263No hitNo description
PfamPF139211.1E-172282No hitNo description
PROSITE profilePS5129419.30870120IPR017930Myb domain
SMARTSM007173.0E-1570118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2073118IPR009057Homeodomain-like
CDDcd001674.19E-1073116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEISRTSNSS FESAKTCQRG HWRPAEDDKL RRLVEQFGPK NWNFISQHLE GRSGKSCRLR  60
WYNQLDPNIN KKPFTEEEEE RLLKAHRIQG NRWASIARLF PGRTDNAVKN HFHVVMARRK  120
RERFSSYASS ASFKRDWQSI ATTSTHSYLP RLNNSSFGAW RSKDEKKHWP WRTSSWTHTG  180
STITCDSSIY DLSGTRKRYN PNLVVLAPRN YQLGSSSVSN CGHGSQEEIF HVTGDSKREG  240
EARGLTGEDD DDDDDDDDDL GKEENDNVAF FDFLGVGLAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-33191197107B-MYB
1gv2_A3e-33191194104MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-321911958158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-321911958158MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-33191194104C-Myb DNA-Binding Domain
1msf_C3e-33191194104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547891.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547891.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLD7M8R22e-91D7M8R2_ARALL; AtMYB69
STRINGXP_010547891.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.18e-94myb domain protein 69