PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010547773.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 327aa MW: 37076 Da PI: 8.6356

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010547773.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.2	1.3e-56	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+kkv ++ +++ ++i evd++k+ePw+Lp k+k +ek+wyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_010547773.1 16 LPPGFRFHPTDEELITHYLHKKVLDSGFTA-KAIGEVDLNKSEPWELPWKAKMGEKDWYFFCVRDRKYPTGMRTNRATEAGYWKATGKDKEIHR- 108 79***********************999.89***********888999***********************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkg+kt+Wvmheyrl XP_010547773.1 109 GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRL 141 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-64	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	60.053	16	166	IPR003441	NAC domain
Pfam	PF02365	3.8E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
METFCGYHKE DEQMDLPPGF RFHPTDEELI THYLHKKVLD SGFTAKAIGE VDLNKSEPWE 60 LPWKAKMGEK DWYFFCVRDR KYPTGMRTNR ATEAGYWKAT GKDKEIHRGK SLVGMKKTLV 120 FYRGRAPKGQ KTNWVMHEYR LDGKLSAHNL PKTAKNEWVL CRVFQKSAGG KKIPISGLIR 180 IGSFGTGLDP SGLPPLTESS PYDQTKTEPV YVPCFSNPTE NQVSTISCFS KHVLSSIHDN 240 IVPRTPLCQN PNPAVWMQEQ PPVLRAMIEN RGRQSFKALS VSQETGVSTE INTDISSDFE 300 CGKRHFDHRG DPSSSAGPVD LESFWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	13	172	17	174	NAC domain-containing protein 19
3swm_B	1e-55	13	172	17	174	NAC domain-containing protein 19
3swm_C	1e-55	13	172	17	174	NAC domain-containing protein 19
3swm_D	1e-55	13	172	17	174	NAC domain-containing protein 19
3swp_A	1e-55	13	172	17	174	NAC domain-containing protein 19
3swp_B	1e-55	13	172	17	174	NAC domain-containing protein 19
3swp_C	1e-55	13	172	17	174	NAC domain-containing protein 19
3swp_D	1e-55	13	172	17	174	NAC domain-containing protein 19
4dul_A	2e-55	13	172	14	171	NAC domain-containing protein 19
4dul_B	2e-55	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010547773.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010547773.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Refseq	XP_010547774.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Refseq	XP_010547775.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	0.0	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A178USB8	0.0	A0A178USB8_ARATH; NAC100
STRING	XP_010547773.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	0.0	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]