PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547722.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YB
Protein Properties Length: 178aa    MW: 19727.2 Da    PI: 4.4626
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547722.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB75.67.6e-2438122387
           NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                     ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c+re+++ti+++ ++ al +lGf +y++++ +  
  XP_010547722.1  38 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREDKRTIAPEHVFRALQDLGFGEYIAEVYAAY 122
                     6899**************************************************************************9875433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-3835169IPR009072Histone-fold
SuperFamilySSF471131.77E-3539168IPR009072Histone-fold
PfamPF008081.5E-2041106IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MFTRCCFFGF ALIAVGASGE KNPPISTMDP MDIVGKSKED ASLPKATMTK IIKEMLPPDV  60
RVARDAQDLL IECCVEFINL VSSESNEVCN REDKRTIAPE HVFRALQDLG FGEYIAEVYA  120
AYEQHKFETM DTQRSGKWNS SGAEMTEEEA AAAQQRMFAE ARARMNNGNS AVSQPEDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-333916212133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547722.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547722.11e-132PREDICTED: protein Dr1 homolog isoform X2
SwissprotP495921e-90NC2B_ARATH; Protein Dr1 homolog
TrEMBLV4KPH03e-90V4KPH0_EUTSA; Uncharacterized protein
STRINGXP_010547721.11e-121(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.42e-76nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]