PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547699.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 313aa    MW: 33602.1 Da    PI: 8.7883
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547699.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.9e-081155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+ e+d  + +a   +  +   +W++Ia+ ++ g+t+ q+k ++ 
   XP_010547699.1 11 TWSREDDIAFENALVNHLDEtedRWEKIAADVP-GKTPDQIKGHYE 55
                     7************99999889************.********9995 PP
2Myb_DNA-binding43.76.4e-14116160347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_010547699.1 116 AWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 160
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.884762IPR017884SANT domain
SMARTSM007176.4E-7860IPR001005SANT/Myb domain
SuperFamilySSF466891.73E-91066IPR009057Homeodomain-like
PfamPF002496.8E-61154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-51157IPR009057Homeodomain-like
CDDcd001675.75E-71158No hitNo description
PROSITE profilePS5129417.763109165IPR017930Myb domain
SuperFamilySSF466895.46E-17111166IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-17113163IPR006447Myb domain, plants
SMARTSM007177.6E-11113163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-11116159IPR009057Homeodomain-like
PfamPF002498.7E-12116160IPR001005SANT/Myb domain
CDDcd001672.75E-10116161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTVDEVSGSS TWSREDDIAF ENALVNHLDE TEDRWEKIAA DVPGKTPDQI KGHYELLVED  60
INSIESGRVP LPAYSSPEGS NGHVGDGGGT DKKGGGDFNH GGGKSKTEQE RRKGIAWTEE  120
EHRLFLLGLD KYGKGDWRSI SRNFVVTRTP TQVASHAQKY FIRLNSLNKD RRRSSIHDIT  180
SIRNGDISSP QGQLTGQNND GRGTVSAGTS STNPPKQTAS QQSPVSPTYG IGQPVGGGGP  240
LVSAVGTPVN LPAPPHMAYG VRAPPIPGSV VPGAPMNLAP LPYPMPHTPT THSERSGEIH  300
ARGVHRTGRR FSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1612801179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547699.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019058741.10.0PREDICTED: transcription factor DIVARICATA-like isoform X1
SwissprotQ9FNN61e-139SRM1_ARATH; Transcription factor SRM1
TrEMBLE4MWT41e-144E4MWT4_EUTHA; mRNA, clone: RTFL01-15-N01
TrEMBLV4LAV41e-144V4LAV4_EUTSA; Uncharacterized protein
STRINGXP_010547699.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-129MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]