PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547546.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 461aa    MW: 50257.3 Da    PI: 5.7137
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547546.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.51.2e-93604522373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl..fsevsPilk 92 
                     ++lL++cA+a++s+d++laq++++ l+++a  dgd++qRl++ f++AL +r a+++++l++a++ +++      +++++++ +l  f++++P+++
  XP_010547546.1  60 EQLLVHCANAIESNDATLAQQIMWVLHNIAPHDGDSNQRLTSAFLRALVSRAASKSPSLAAAVADTDNLAAAaaEVHRFSVIELagFVDLTPWHR 154
                     79*********************************************************999965555433334666667777799********* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg........skeeleetgerLakfAeelgvpfefn 179
                     f++ +aN aIleaveg ++vHi+D+++++++Q p+L++a+asR ++pp l++T+ + +  g           ++e +g++L +fA++ ++ +ef+
  XP_010547546.1 155 FGFTAANAAILEAVEGYSAVHIVDLSLTHCMQIPTLIDAMASRLRKPPLLKLTVAATAGGGdspplpplLGVSYEDLGSKLVNFATTRNIVMEFR 249
                     ******************************************************99966558899998888999********************* PP

            GRAS 180 vl...vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                     ++   +++ +++l +e+Lr++p   +Eal++n++++lh+++de+++ +s      r  +Lk ++ l+P++v++++++ad++s++++ r+ +a++y
  XP_010547546.1 250 IIpstYSDGFSSL-IEHLRIQPftfNEALVINCHMMLHYVPDETLTPTSspeksLRGVFLKELRALNPTIVTLIDEDADLTSNNLVCRLRSAFNY 343
                     *988667778888.9***************************9987666555567899************************************* PP

            GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesg 356
                      +  +d++++ l r s++r ++E+  ++++i+nvva+eg++r+er e +++W +r+++aGF+ v ++++aa+++k +l++++ +  + ++ ++++
  XP_010547546.1 344 LWIPYDTMDTFLTRGSKQREWYEAD-ISWKIENVVANEGSARVERAEPKSRWVDRMTAAGFTGVGFGKEAAAEVKVMLEEHAaG--WGMKrDDDD 435
                     *************************.********************************************************55..555525567 PP

            GRAS 357 slvlgWkdrpLvsvSaW 373
                      ++l+Wk++ +v+++aW
  XP_010547546.1 436 HIILTWKGHDVVFATAW 452
                     788************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.4833433IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.10.105.9E-448125IPR011989Armadillo-like helical
PfamPF035144.3E-9160452IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MQFAEHQLLS PGPTIVMNKT PFLNPTRPWP GFPSSKPSCS GGGGGSASSS AAFGDANCME  60
QLLVHCANAI ESNDATLAQQ IMWVLHNIAP HDGDSNQRLT SAFLRALVSR AASKSPSLAA  120
AVADTDNLAA AAAEVHRFSV IELAGFVDLT PWHRFGFTAA NAAILEAVEG YSAVHIVDLS  180
LTHCMQIPTL IDAMASRLRK PPLLKLTVAA TAGGGDSPPL PPLLGVSYED LGSKLVNFAT  240
TRNIVMEFRI IPSTYSDGFS SLIEHLRIQP FTFNEALVIN CHMMLHYVPD ETLTPTSSPE  300
KSLRGVFLKE LRALNPTIVT LIDEDADLTS NNLVCRLRSA FNYLWIPYDT MDTFLTRGSK  360
QREWYEADIS WKIENVVANE GSARVERAEP KSRWVDRMTA AGFTGVGFGK EAAAEVKVML  420
EEHAAGWGMK RDDDDHIILT WKGHDVVFAT AWVPLNVVNL I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-475445428420Protein SHORT-ROOT
5b3h_E2e-475445428420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547546.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547546.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2P5XRM20.0A0A2P5XRM2_GOSBA; Uncharacterized protein
STRINGXP_010547546.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein