PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010547450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | GATA | ||||||||
Protein Properties | Length: 291aa MW: 32449.9 Da PI: 6.4063 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.2 | 5.4e-19 | 220 | 254 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l XP_010547450.1 220 CSHCGAQKTPQWRAGPLGAKTLCNACGVRYKSGRL 254 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 9.3E-96 | 12 | 289 | IPR016679 | Transcription factor, GATA, plant |
SuperFamily | SSF57716 | 2.28E-14 | 213 | 276 | No hit | No description |
SMART | SM00401 | 2.5E-15 | 214 | 268 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.701 | 214 | 250 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.0E-15 | 218 | 252 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.33E-14 | 219 | 267 | No hit | No description |
Pfam | PF00320 | 1.0E-16 | 220 | 254 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 220 | 245 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MERVEGALKS SVRREIAMRL TPPAFIDDLL AVNSQNGVSP EDFSVDDLLD FSNDDIFAEE 60 DSEPRDRQER FSVSSEDPQD DENTLFRRTD FSAAGYFEPI PSGELSVPAD DVASLEWLSH 120 FVEDSFSEYS APDLTRTPKE KPTWLTGDRK HPVTPVNEDS CFKPAVPAKA RSKRTRTGGQ 180 VWSPSLSDSS SSSTSSSSSH WERPPVAKRQ KGEGGQQRRC SHCGAQKTPQ WRAGPLGAKT 240 LCNACGVRYK SGRLLPEYRP ACSPTFSSEL HSNHHRKVIE MRRKKETVVG F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010547450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010547449.1 | 0.0 | PREDICTED: GATA transcription factor 5-like isoform X1 | ||||
Refseq | XP_010547450.1 | 0.0 | PREDICTED: GATA transcription factor 5-like isoform X2 | ||||
Swissprot | Q9FH57 | 1e-115 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A178UHW1 | 1e-113 | A0A178UHW1_ARATH; GATA transcription factor | ||||
STRING | XP_010547449.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 1e-116 | GATA transcription factor 5 |