PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547449.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 330aa    MW: 36935 Da    PI: 6.8823
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547449.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.5e-19259293135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  XP_010547449.1 259 CSHCGAQKTPQWRAGPLGAKTLCNACGVRYKSGRL 293
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.8E-14252315No hitNo description
PROSITE profilePS5011411.701253289IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-15253307IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.1E-15257291IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.30E-14258306No hitNo description
PfamPF003201.2E-16259293IPR000679Zinc finger, GATA-type
PROSITE patternPS003440259284IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MLYQTHRHPF VLFHSHHHHS PLSATVPSPL VFSSLLSQEM ERVEGALKSS VRREIAMRLT  60
PPAFIDDLLA VNSQNGVSPE DFSVDDLLDF SNDDIFAEED SEPRDRQERF SVSSEDPQDD  120
ENTLFRRTDF SAAGYFEPIP SGELSVPADD VASLEWLSHF VEDSFSEYSA PDLTRTPKEK  180
PTWLTGDRKH PVTPVNEDSC FKPAVPAKAR SKRTRTGGQV WSPSLSDSSS SSTSSSSSHW  240
ERPPVAKRQK GEGGQQRRCS HCGAQKTPQW RAGPLGAKTL CNACGVRYKS GRLLPEYRPA  300
CSPTFSSELH SNHHRKVIEM RRKKETVVGF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547449.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547449.10.0PREDICTED: GATA transcription factor 5-like isoform X1
SwissprotQ9FH571e-114GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A178UHW11e-112A0A178UHW1_ARATH; GATA transcription factor
STRINGXP_010547449.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-115GATA transcription factor 5