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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010547445.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C3H | ||||||||
Protein Properties | Length: 1316aa MW: 145583 Da PI: 6.0986 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.9 | 5.7e-06 | 1295 | 1316 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ f+++G Ck G++C+F H+ XP_010547445.1 1295 RICK-FYENGRCKKGASCSFWHP 1316 78**.6666***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 3.2E-9 | 109 | 169 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 1.53E-8 | 110 | 170 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50016 | 8.689 | 114 | 180 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.5E-6 | 116 | 162 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15568 | 5.51E-19 | 116 | 161 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 117 | 177 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00151 | 0.0022 | 329 | 412 | IPR019835 | SWIB domain |
SuperFamily | SSF47592 | 3.71E-20 | 331 | 408 | IPR003121 | SWIB/MDM2 domain |
Gene3D | G3DSA:1.10.245.10 | 6.6E-23 | 331 | 413 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 1.2E-13 | 339 | 407 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00719 | 8.9E-49 | 466 | 576 | IPR004343 | Plus-3 domain |
PROSITE profile | PS51360 | 19.718 | 466 | 599 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 6.15E-28 | 467 | 596 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 1.1E-18 | 471 | 574 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 7.46E-16 | 740 | 797 | IPR003169 | GYF domain |
PROSITE profile | PS50829 | 15.28 | 744 | 798 | IPR003169 | GYF domain |
SMART | SM00444 | 7.6E-16 | 745 | 800 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 1.5E-17 | 746 | 798 | IPR003169 | GYF domain |
CDD | cd00072 | 3.25E-17 | 747 | 799 | No hit | No description |
Pfam | PF02213 | 5.9E-12 | 747 | 790 | IPR003169 | GYF domain |
SuperFamily | SSF90229 | 7.59E-6 | 1291 | 1315 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.333 | 1291 | 1316 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-4 | 1295 | 1315 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1316 aa Download sequence Send to blast |
MDNHQQQLRQ GEPGKAALAR RGDGSVNGID LMRVDLRDEI GETGAPPIAG ASSTVGVVVG 60 VDGGLVDVSI EQEPKIVDGV SPAKRRRGRP PRGQAKTLPQ PRPPPPRKME DEEEDVCFIC 120 FDGGDLVLCD RRNCPKAYHP ACIKRDEAFF QTKAKWNCGW HICSTCQKAS SYMCYTCTYS 180 VCKRCIKDAN YVSVRGNMGL CAICMKTIML IENVAQSDKE TVKVDFDDKT SWEYLFKVYW 240 LCLKEKLSLT LSELTKATTP WKEVSSVAPK VELGNELCDH SYNRVHSSEN TCVDVAVDGT 300 KRRRTSDSPT LLNMNTKNSG DNQEKLPRAT EWATKELLEF VAYMKNGDIS VLSQFDVQTL 360 LLDYIKRKNL RDPREKSHVL CDSMLMRLFG KQRVGHFEML KLLEFHFLIQ ENSPNAKTMN 420 GEATHAIPHQ MVEDGVEETT RSDQRRKTRK KAGDGVRNAN KDEYAAIDVH NINLIYLRRK 480 FLETLLDDID KVHEKVVGTI VRIRVSGNDQ KLDIHRLVQV VGTCKATESY QIGTRTTDVM 540 LEILNLDKRE VISIDQLSDQ DITEDECKRL RQSIKCGLNK RFIVAEILEK AATLQSMRVS 600 EALEAEILKL NYLRDRASEN GYRKELRECI EKLELLKSPE ERRRRMQEIS EVHTDPSMNP 660 CHASAEDAEL GTIKQDNQIK TSSKNPQNKG DILNNLGNSA QRNFAAAFLR SKNVCTTFYA 720 DRDGSSNVQN SSDIQETVQE EEESEVWHYQ DPTGKTQGPF SMAQLRRWKS SGHFPPYLRI 780 WRSHEKQDDS VLLTDALAGR SNKANTLLSA SMPSQELKLA VESGLDVTAS SDKGVDNNHR 840 ENPTANNTSA SSCSSSYVVP VAVTIQNERQ KESLPSGVGK LASGNSHCPP HAIATCPPSS 900 SMDLENAVSH EVREIPVRDV CNAVETGGSH SFVKNIKDDG AHAASVSLNG SVHTPNLNQE 960 IHFLDFSSPT PKSSPEDLET QAAETIQSLS SCVLVKGPSG VTWSTATTAA TPSSIVVSGT 1020 QLPEVPQQNG AVMPPALVVK PAELSTEHVI ATQTSDNTQV AHHSSGWPAI VADPDECDES 1080 VSDLLAEVEA MEQNGLPSSP TSTFHCDDDD DDDLTKGPEK DFFHPVARMS LATELCMSNG 1140 AEVDVLDSQN VYTSGTDPKE SSKAMDAPPV SIHCETTTGL ELPLFTQPVP PASISHDLTL 1200 TTTALRLGSE ATVEGGALDD ISKTEPSHKS GNEGTARGNN GQQQQQRNER ERGTTGHRDR 1260 ERQWWNHGSS GYSHTNRQWP YSSSGHASHP PRGLRICKFY ENGRCKKGAS CSFWHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4gnd_A | 4e-14 | 106 | 183 | 10 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnd_C | 4e-14 | 106 | 183 | 10 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gne_A | 4e-14 | 106 | 183 | 10 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnf_A | 4e-14 | 106 | 183 | 10 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_A | 4e-14 | 106 | 183 | 10 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_D | 4e-14 | 106 | 183 | 10 | 81 | Histone-lysine N-methyltransferase NSD3 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010547445.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189627 | 5e-51 | AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010547445.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X1 | ||||
Swissprot | Q9SD34 | 0.0 | C3H44_ARATH; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | V4NGU0 | 0.0 | V4NGU0_EUTSA; Uncharacterized protein | ||||
STRING | XP_010547445.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7787 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51120.1 | 0.0 | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding |