PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010547380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 1562aa MW: 171096 Da PI: 5.9413 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.6 | 9.2e-11 | 800 | 842 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+eE+e++v+ ++ +G++ +++Ia+ + ++t +c+++++k XP_010547380.1 800 NPWTKEEEEIFVEKFATYGKD-FRRIASFLD-HKTTADCIEFYYK 842 69*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 26 | 2.2e-08 | 1014 | 1055 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g WT eE l+ +a ++G++ +++I+r++ +++++ c+ ++ XP_010547380.1 1014 GDWTDEERSLFMHALSLYGKD-FASISRCIR-TKSREKCRIFFS 1055 78*****************99.*********.*******98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.43E-15 | 785 | 846 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-7 | 792 | 844 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 17.202 | 797 | 848 | IPR017884 | SANT domain |
SMART | SM00717 | 3.0E-12 | 798 | 846 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-8 | 800 | 842 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 13.076 | 1011 | 1062 | IPR017884 | SANT domain |
SMART | SM00717 | 1.2E-7 | 1012 | 1060 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-7 | 1014 | 1054 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.4E-9 | 1014 | 1063 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-5 | 1016 | 1054 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1562 aa Download sequence Send to blast |
MPPESLPWDR KDDFREKKHE RPESFGSNPR WRNSSAASYS PHYGSRDFPR WGSPDFRRPP 60 YSGKQGSWEQ FEETSSHGCA ASRSGGRTFG NVTYQSSVSR GDFRHCRNIR DNRGSFVQRD 120 WKPHAWVANN GATNAFGRPF DMITDQRLAE NIPPCPASQS DTMKTWDQFR DKQDNKVSGN 180 NGLNAGQKCE LETSLSSVDW KPLKWTRSGS LCSRSSGFSN SSSSKSLGAV DSSEMKDENL 240 RSSATLLQSP PGNATPCVAS AVSSDEAISR KKPRLGWGEG LAKYEKRKVD GPDVNVQKDG 300 PTLSTNSSEA APSLVSSLVD KSPRILGFTD CASPATPSSI ACSSSPSADD NLYRKAANAN 360 SEPNNMSGLP SLGVWNQLEG FSFNLENLDD VSMANLSSSL NWLLHLADPG SVDCCFASST 420 AMSRLLFWKG DVLKTLEVAE SEIDLLENEL KRIKSESGDF SLCPASSSSL AVDVNTNLSK 480 ELEAVSTFIL RPAPLQLTCS ADEVVDKTPT GCSGLEEHPA NGKAEDLDSP GTATSKLLEP 540 LSLANSLLVS KFEFFVEDSG NSIKNQSQDL LLSCNESCLA GNDDVNAPLN SENIELASGG 600 SRSDDGDDIQ CKNIMLCNKE SARQASEVLI KLLPGDFRSD NALDLSDIVG SPDSVLVRQR 660 ITARRRMMRF KEKVLAIKFK AFLNAWRKDM HQLSMRRCRP RSQKKVDSGL RMINGGYTKN 720 RTHSRSRLSS PGNLCQISFP EMVSLTSEIL SNSPQRPYRN VLKMPEIILE DKEKIFSRFI 780 STNGLIEDPC AVEKERARMN PWTKEEEEIF VEKFATYGKD FRRIASFLDH KTTADCIEFY 840 YKNHKSDCFK KIKKCGNNKQ EKCAANTYLV TSSKKWNRDT NAVSLNILGA VSAMAAHADC 900 KTASGSRFSV RITSGKRIES KMSQADDCIE RSSSFDLPEK ESFAADILAG FCGSLSSEAM 960 SSCITSCVDP GEICRDWKFQ RMDSSRKRCS VSDITQTAND DTCSDDSCGE TDSGDWTDEE 1020 RSLFMHALSL YGKDFASISR CIRTKSREKC RIFFSKARKR LGLDSILLPR NVGSSVSDDA 1080 DGDGSDSEDA CVLGTSSAIC NDVVDAKRDE DLSGSPFKIN QDACLLGPVK LETDLNMSEV 1140 EDVRGILDRS IHLDTFGVDD KHQGHHGVAN ESVNGNCVKI QAQPDQQAQE DTVLSTDAEK 1200 SMDSASQYHA SSCAVASFAP CSSLSDELPA SDIVKVTMET RKEDSVLDKS VMSITNLNED 1260 ACGKHDGRNF VQDSLVNNAN ATNNQEADTS SFSGFNNFDC QPQVSVQRRL HIPSLQEQAT 1320 ISVKLESPGH AILAALDKPG NDVSLTTNVE KAKPDHEFVG RCHHLQNVAA PHVPTSHILS 1380 DHALRISTKK EMDSDVYWGQ VREVQMNLKS DAGIGNECVA QGFSLRKCNG LINEQKVLSL 1440 EQKSGTDKSC KNGDVKLFGK ILTPHENEGK GLGLDSKQSG KPPTLNFAVQ KSADGQPANV 1500 GRDKVDYSGH ENVPIRSYGF WDGTRIQTGL SSLPDSAILL AKYPAAFANY SASSSAKEQQ 1560 EP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 5e-17 | 759 | 850 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 5e-17 | 759 | 850 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 270 | 287 | KKPRLGWGEGLAKYEKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010547380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010547380.1 | 0.0 | PREDICTED: uncharacterized protein LOC104819148 isoform X2 | ||||
STRING | XP_010547379.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-177 | MYB family protein |