PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547258.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 347aa    MW: 38678.2 Da    PI: 4.6879
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-153582148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ede+l+++    G g+W+ Iar  g+ R++k+c++rw +yl
   XP_010547258.1 35 KGLWSPDEDEKLIKYMLTNGQGCWTDIARNAGLQRCGKSCRLRWINYL 82
                     678*******************************************97 PP
2Myb_DNA-binding482.9e-1588132147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg ++++E++l+++++  lG++ W+ Ia++++ gRt++++k++w++ 
   XP_010547258.1  88 RGGFSPQEEDLILHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 132
                      788*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-232785IPR009057Homeodomain-like
PROSITE profilePS5129416.8853082IPR017930Myb domain
SuperFamilySSF466894.3E-2833129IPR009057Homeodomain-like
SMARTSM007176.6E-123484IPR001005SANT/Myb domain
PfamPF002496.6E-143582IPR001005SANT/Myb domain
CDDcd001672.74E-103882No hitNo description
PROSITE profilePS5129424.19883137IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2586138IPR009057Homeodomain-like
SMARTSM007172.3E-1587135IPR001005SANT/Myb domain
PfamPF002494.1E-1488132IPR001005SANT/Myb domain
CDDcd001672.17E-1191133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MMMMRKADMI IEDSNTATNI MNGNNNNSSK AKLRKGLWSP DEDEKLIKYM LTNGQGCWTD  60
IARNAGLQRC GKSCRLRWIN YLRPDLKRGG FSPQEEDLIL HLHSILGNRW SQIAARLPGR  120
TDNEIKNFWN STLKKRLKNN NSTLSSSSSI SSSPNNSNSN SMEPRDQQLD IGYGLTQTNG  180
HRDDMMMGMP MSMDSSSSSS LSCNFQPMVS NQFDPLMISM MDNQVGNTGD MFNVNGLSDC  240
IQVPSGDYGN SIPDSTSKSG SVEGEFSVLP PSEDRSSIND TNIVACSTSN NGYMDIDTCF  300
CSRTEGHSDS VEMGNMLRME NPKIGDWDFD CLMENISSFP FLDFHVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28331375108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547258.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547258.10.0PREDICTED: transcription factor MYB24
SwissprotQ9C6U11e-123MYB83_ARATH; Transcription factor MYB83
TrEMBLD7L7471e-123D7L747_ARALL; Uncharacterized protein
STRINGXP_010547258.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70772642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.11e-107myb domain protein 83
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]