PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547254.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 372aa    MW: 41311.1 Da    PI: 6.4627
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547254.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94e-06215234120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  nL+ H+
  XP_010547254.1 215 FSCPVCFKTFNRYNNLQMHM 234
                     89*****************9 PP
2zf-C2H214.69.5e-05299321123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  Cgk+F  k + ++H +++
  XP_010547254.1 299 FSCRRCGKPFAVKGDWRTHEKNC 321
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.159215242IPR007087Zinc finger, C2H2
SMARTSM003550.21215237IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-5215234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.64E-7215237No hitNo description
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4286319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.64E-7294319No hitNo description
SMARTSM00355110299319IPR015880Zinc finger, C2H2-like
SMARTSM00355150325348IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MTDPCWFNFM PPLQPYYSSS SSSSSSSSSS SSSFAHNIPN TSSWFSPYSY TNPTPSASSY  60
PSRVALPLID YLNPTKELLD NSSSNNLHEN SSSSNMESMA KDSYGGDDED ECDEDDDGCG  120
GDDDGYLHGH HQHGDEDVSV ALNIGLPNSS ANPNYGGSKN NFVAADVVLN HDHHDKEDHH  180
QDDVSVVSGY PFGRLNKGQY WIPTPTQILL GPTQFSCPVC FKTFNRYNNL QMHMWGHGSQ  240
YRKGPDSLRG TQPTGMLRLP CFCCAPNCKH NIDHPRAKPL KDFRTLQTHF KRKHGAKPFS  300
CRRCGKPFAV KGDWRTHEKN CGRVWFCVCG SDFRHKRSLK DHVRAFGHGH GGVGGDDDDE  360
PASEIDHDGN DQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547254.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547254.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-116ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A371HIC61e-126A0A371HIC6_MUCPR; Zinc finger protein WIP2 (Fragment)
TrEMBLA0A445JF551e-126A0A445JF55_GLYSO; Zinc finger protein WIP2
TrEMBLI1KTM11e-126I1KTM1_SOYBN; Uncharacterized protein
STRINGXP_010547254.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-105C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]