PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547221.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 504aa    MW: 56307.8 Da    PI: 6.1063
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547221.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4554.8e-1391335041374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+avs++dl +aq+++ +l+ ++s +g+p+qRl ay++e+L arl++s+s++yk+l+  +++   s++ l+++++++ev+P++kf++
  XP_010547221.1 133 LRTVLVSCAKAVSDNDLLMAQWMIDELRLMVSVSGEPIQRLGAYLLEGLVARLSSSGSSIYKSLNRCPEP--ASTDLLSYMHILYEVCPYFKFGY 225
                     5789************************************************************666665..499******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea+++e+rvHi+Df+i+qG QW++L+qa+a+Rp+gpp++RiTg+++ +s   +  +l+ +g+rLak+A +++vpfefn+ v+ + ++
  XP_010547221.1 226 MSANGAIAEAMKEENRVHIVDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDITSAyaRGGSLSIVGNRLAKLAGQFKVPFEFNA-VSVSGSE 319
                     ******************************************************999899999************************.7999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L ++pgEalaVn+++ lh+++desvs+e++rd++L++vk+lsPkvv++veqe+++n++ F+ rf+e+++yy+a+f+s++++lpr++++ri
  XP_010547221.1 320 VKPENLGIRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKGLSPKVVTLVEQESNTNTAAFFPRFIETMNYYTAMFESIDVTLPRDHKQRI 414
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r++vn+vaceg+er+erhe l+kWr+r+e+aGF p+pls+ ++++++ ll+++++  yr+ee++g l+lgWk+r Lv+ +aW+
  XP_010547221.1 415 NVEQHCLARDVVNIVACEGTERVERHELLGKWRSRFEMAGFDPYPLSSLVNSTIEGLLKNYSD-KYRLEEREGVLYLGWKNRDLVVSCAWK 504
                     **************************************************************5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.117107485IPR005202Transcription factor GRAS
PfamPF035141.7E-136133504IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MSDMSAFQTF DNQFNFSSTA KLRHLPVQNP HKRYCTLESS TSSLAGINPS VYDPFSSKSL  60
QNNSPDHGSS SLSGSCVTDD VNDLRHKLKE LETAMLGPDS EVFDCLDSTE STTACQDIDS  120
WRTTFQAISR RDLRTVLVSC AKAVSDNDLL MAQWMIDELR LMVSVSGEPI QRLGAYLLEG  180
LVARLSSSGS SIYKSLNRCP EPASTDLLSY MHILYEVCPY FKFGYMSANG AIAEAMKEEN  240
RVHIVDFQIG QGSQWVTLIQ AFAARPGGPP RIRITGIDDI TSAYARGGSL SIVGNRLAKL  300
AGQFKVPFEF NAVSVSGSEV KPENLGIRPG EALAVNFAFV LHHMPDESVS TENHRDRLLR  360
MVKGLSPKVV TLVEQESNTN TAAFFPRFIE TMNYYTAMFE SIDVTLPRDH KQRINVEQHC  420
LARDVVNIVA CEGTERVERH ELLGKWRSRF EMAGFDPYPL SSLVNSTIEG LLKNYSDKYR  480
LEEREGVLYL GWKNRDLVVS CAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-651375048375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547221.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547221.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X2
RefseqXP_010547222.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X2
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLR0G9L10.0R0G9L1_9BRAS; Uncharacterized protein
STRINGXP_010547219.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]