PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010547220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | GRAS | ||||||||
Protein Properties | Length: 512aa MW: 57163.7 Da PI: 5.801 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 454.9 | 5.1e-139 | 141 | 512 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+++L++cA+avs++dl +aq+++ +l+ ++s +g+p+qRl ay++e+L arl++s+s++yk+l+ +++ s++ l+++++++ev+P++kf++ XP_010547220.1 141 LRTVLVSCAKAVSDNDLLMAQWMIDELRLMVSVSGEPIQRLGAYLLEGLVARLSSSGSSIYKSLNRCPEP--ASTDLLSYMHILYEVCPYFKFGY 233 5789************************************************************666665..499******************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN aI ea+++e+rvHi+Df+i+qG QW++L+qa+a+Rp+gpp++RiTg+++ +s + +l+ +g+rLak+A +++vpfefn+ v+ + ++ XP_010547220.1 234 MSANGAIAEAMKEENRVHIVDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDITSAyaRGGSLSIVGNRLAKLAGQFKVPFEFNA-VSVSGSE 327 ******************************************************999899999************************.7999*** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L ++pgEalaVn+++ lh+++desvs+e++rd++L++vk+lsPkvv++veqe+++n++ F+ rf+e+++yy+a+f+s++++lpr++++ri XP_010547220.1 328 VKPENLGIRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKGLSPKVVTLVEQESNTNTAAFFPRFIETMNYYTAMFESIDVTLPRDHKQRI 422 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vE+++l+r++vn+vaceg+er+erhe l+kWr+r+e+aGF p+pls+ ++++++ ll+++++ yr+ee++g l+lgWk+r Lv+ +aW+ XP_010547220.1 423 NVEQHCLARDVVNIVACEGTERVERHELLGKWRSRFEMAGFDPYPLSSLVNSTIEGLLKNYSD-KYRLEEREGVLYLGWKNRDLVVSCAWK 512 **************************************************************5.5*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 70.117 | 115 | 493 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-136 | 141 | 512 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MLLDNGPDMS DMSAFQTFDN QFNFSSTAKL RHLPVQNPHK RYCTLESSTS SLAGINPSVY 60 DPFSSKSLQN NSPDHGSSSL SGSCVTDDVN DLRHKLKELE TAMLGPDSEV FDCLDSTEST 120 TACQDIDSWR TTFQAISRRD LRTVLVSCAK AVSDNDLLMA QWMIDELRLM VSVSGEPIQR 180 LGAYLLEGLV ARLSSSGSSI YKSLNRCPEP ASTDLLSYMH ILYEVCPYFK FGYMSANGAI 240 AEAMKEENRV HIVDFQIGQG SQWVTLIQAF AARPGGPPRI RITGIDDITS AYARGGSLSI 300 VGNRLAKLAG QFKVPFEFNA VSVSGSEVKP ENLGIRPGEA LAVNFAFVLH HMPDESVSTE 360 NHRDRLLRMV KGLSPKVVTL VEQESNTNTA AFFPRFIETM NYYTAMFESI DVTLPRDHKQ 420 RINVEQHCLA RDVVNIVACE GTERVERHEL LGKWRSRFEM AGFDPYPLSS LVNSTIEGLL 480 KNYSDKYRLE EREGVLYLGW KNRDLVVSCA WK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-65 | 145 | 512 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010547220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010547219.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 isoform X1 | ||||
Refseq | XP_010547220.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 isoform X1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | R0G9L1 | 0.0 | R0G9L1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010547219.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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