PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547004.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 178aa    MW: 19898.5 Da    PI: 7.0961
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-204694355
             AP2  3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    y+G+r+++ +g+W+AeIrd +     +  r++lg++ taeeAa+a+++a+++++g
  XP_010547004.1 46 YRGIRQRP-WGKWAAEIRDpF-----KgVRVWLGTYETAEEAARAYDKAARQIRG 94
                    9*******.**********55.....45***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-3345103IPR001471AP2/ERF domain
PROSITE profilePS5103224.32945102IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2345102IPR016177DNA-binding domain
SMARTSM003809.1E-3745108IPR001471AP2/ERF domain
PfamPF008472.8E-134694IPR001471AP2/ERF domain
PRINTSPR003674.8E-124657IPR001471AP2/ERF domain
CDDcd000184.59E-3146102No hitNo description
PRINTSPR003674.8E-126884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MCGGAIFSDL LAAEKWKNTA ELRSSKVEEG LQRKGKKRGR ERKNMYRGIR QRPWGKWAAE  60
IRDPFKGVRV WLGTYETAEE AARAYDKAAR QIRGDKAKLN FPKPEPEPEP EHGPQAKRLC  120
GFVVGAAPVQ QQPMYADGEE ACDPSNGLGL GVEAGEDMSS CSCSPDFWMF DDLFIETL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2346102663ATERF1
3gcc_A7e-2346102663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547004.11e-129PREDICTED: ethylene-responsive transcription factor ERF071-like
SwissprotO222593e-38ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLA0A2C9WBF28e-39A0A2C9WBF2_MANES; Uncharacterized protein
STRINGXP_010547004.11e-129(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.16e-24ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]