PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010546706.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 1055aa MW: 117163 Da PI: 9.3088

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010546706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	44	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+ E e+++da +++G + W+++a+ + ++R+ +++ XP_010546706.1 44 QWTKGELERFYDAYRKHGLD-WRKVAAAVRNNRSVEMV 80 6***************99.*******99998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.22E-7	43	89	IPR009057	Homeodomain-like
Pfam	PF00249	6.8E-6	44	80	IPR001005	SANT/Myb domain
CDD	cd00167	5.65E-4	45	90	No hit	No description
Pfam	PF06584	3.4E-30	631	732	IPR033471	DIRP domain
SMART	SM01135	6.0E-52	631	733	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1055 aa Download sequence Send to blast
MAPSRKSRSV NKRFSNEASP EKDVGNSSKS KQMKKKLSDN LGPQWTKGEL ERFYDAYRKH 60 GLDWRKVAAA VRNNRSVEMV EALFCMNRAY LSLPEGTASV AGLIAMMTDH YSVMDGSDSE 120 AEGHDASGVP RKYQKRKHAH VQFSESREEA NPSHSFASTD GCLLFLKEAQ DYGSWRRATG 180 KRTPRFPVPR SYRRDDREGS TPPSKRARKL VDNDDVAHLF ALTLTEASKR GGSEPPYRRT 240 EHSDSSPIKS LGETSQAREA QSKLRGCSKY EEWVEGNREK KHETGVSDRD ATSFMDMEVV 300 GTLEALQGGK NVKAEEVEGN DCDEKGEACS ASEELRSKSQ QGKVDVEGPR GKYSPRCLKK 360 RNKKLHSKDE FEALQALLKL STSTFPVALM ESESAARIKD ERTANNMDEK SSAPEATSTS 420 PLGRKSTQDG AEENALNAIS AVENTNYRKP KSLRQASADG SAGPAGNQQQ QPTSGTSRRR 480 RKPKVLDAEP PKNSNQNKST LVEESVREEN AKSVVRTKRS GQAPAEGKQL KTAKTLEESS 540 PAGDKKRPDA GVTMSTIPVS ASGPATLPQK PPNRRKVNLK KMLQERVKFS ETTSKAPHSD 600 ESLSEHELLQ EKLSTCLSNP LARRRCIFEW FYSAIDYLWF TKMEFMDYLN HVGLGHIPRL 660 ARFEWNVIKS SLGRPRRFSE RFLQEERDKL QHYRETVRKH YTDLRAGVTR EGLPADLARP 720 LSVGNKVIAI HPKTREIQCG KILTVDHNKC SVLFDRDDLG AEFVMDIDCM PSNPLEYMPE 780 GLRRHISKGL PISKEAQLNR HPNSGGSVML PSNGLENATF SMNPPLQQGD TNGQILLGKI 840 STTNPTTVQQ ATNNQPYTTT CRKAKELVIQ QALAMQHTSI EKEKEPEMLE IFKGSKSRAQ 900 AMVDAAVKAA CSVIEGEDKG KKIQEAIDSM GKHQPLPGSM VPGVKHQEHA NGSLDHLSQS 960 PSETSPPLVN GSISQNGSEK NEDQMPSELI SSCVATWLMI QTCTERQYPP ADVAQLIDTA 1020 VTSLHPKCPQ NLPIYREIQT CMGRIKTQIL ALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1055 aa Download sequence Send to blast

MAPSRKSRSV NKRFSNEASP EKDVGNSSKS KQMKKKLSDN LGPQWTKGEL ERFYDAYRKH  60
GLDWRKVAAA VRNNRSVEMV EALFCMNRAY LSLPEGTASV AGLIAMMTDH YSVMDGSDSE  120
AEGHDASGVP RKYQKRKHAH VQFSESREEA NPSHSFASTD GCLLFLKEAQ DYGSWRRATG  180
KRTPRFPVPR SYRRDDREGS TPPSKRARKL VDNDDVAHLF ALTLTEASKR GGSEPPYRRT  240
EHSDSSPIKS LGETSQAREA QSKLRGCSKY EEWVEGNREK KHETGVSDRD ATSFMDMEVV  300
GTLEALQGGK NVKAEEVEGN DCDEKGEACS ASEELRSKSQ QGKVDVEGPR GKYSPRCLKK  360
RNKKLHSKDE FEALQALLKL STSTFPVALM ESESAARIKD ERTANNMDEK SSAPEATSTS  420
PLGRKSTQDG AEENALNAIS AVENTNYRKP KSLRQASADG SAGPAGNQQQ QPTSGTSRRR  480
RKPKVLDAEP PKNSNQNKST LVEESVREEN AKSVVRTKRS GQAPAEGKQL KTAKTLEESS  540
PAGDKKRPDA GVTMSTIPVS ASGPATLPQK PPNRRKVNLK KMLQERVKFS ETTSKAPHSD  600
ESLSEHELLQ EKLSTCLSNP LARRRCIFEW FYSAIDYLWF TKMEFMDYLN HVGLGHIPRL  660
ARFEWNVIKS SLGRPRRFSE RFLQEERDKL QHYRETVRKH YTDLRAGVTR EGLPADLARP  720
LSVGNKVIAI HPKTREIQCG KILTVDHNKC SVLFDRDDLG AEFVMDIDCM PSNPLEYMPE  780
GLRRHISKGL PISKEAQLNR HPNSGGSVML PSNGLENATF SMNPPLQQGD TNGQILLGKI  840
STTNPTTVQQ ATNNQPYTTT CRKAKELVIQ QALAMQHTSI EKEKEPEMLE IFKGSKSRAQ  900
AMVDAAVKAA CSVIEGEDKG KKIQEAIDSM GKHQPLPGSM VPGVKHQEHA NGSLDHLSQS  960
PSETSPPLVN GSISQNGSEK NEDQMPSELI SSCVATWLMI QTCTERQYPP ADVAQLIDTA  1020
VTSLHPKCPQ NLPIYREIQT CMGRIKTQIL ALVPT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010546706.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019058704.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like
Refseq	XP_019058705.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A1J3IUE4	0.0	A0A1J3IUE4_NOCCA; Protein ALWAYS EARLY 2
STRING	XP_010546706.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-127	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]