PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010546434.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TCP | ||||||||
Protein Properties | Length: 152aa MW: 17283.5 Da PI: 9.3762 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 91.2 | 2.3e-28 | 55 | 131 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............s 66 g+kdrhsk++T +g+RdRR+Rls+++a +++dLqd LG+ ++sk i+WLl +ak +++++ + XP_010546434.1 55 GGKDRHSKVCTVRGLRDRRIRLSVPTAVQLYDLQDGLGLNQPSKVIDWLLDAAKNDVDKIPPLqfphgfnqfypnlM 131 68************************************************************944444444444442 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.489 | 56 | 114 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.4E-28 | 56 | 145 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MRECEDFQTK QEADRRHQSS VNLNQIQPST SSSLSRHWTS ALKNPRIVRD SRILGGKDRH 60 SKVCTVRGLR DRRIRLSVPT AVQLYDLQDG LGLNQPSKVI DWLLDAAKND VDKIPPLQFP 120 HGFNQFYPNL MFGSSSNCES LSGNQDLFKN CV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-18 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-18 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010546434.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010546434.1 | 1e-110 | PREDICTED: transcription factor TCP5-like | ||||
Swissprot | Q9FME3 | 2e-61 | TCP5_ARATH; Transcription factor TCP5 | ||||
TrEMBL | R0EXI8 | 1e-65 | R0EXI8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010546434.1 | 1e-110 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 6e-60 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Publications ? help Back to Top | |||
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