PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546434.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 152aa    MW: 17283.5 Da    PI: 9.3762
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.22.3e-2855131366
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............s 66 
                     g+kdrhsk++T +g+RdRR+Rls+++a +++dLqd LG+ ++sk i+WLl +ak  +++++ +              
  XP_010546434.1  55 GGKDRHSKVCTVRGLRDRRIRLSVPTAVQLYDLQDGLGLNQPSKVIDWLLDAAKNDVDKIPPLqfphgfnqfypnlM 131
                     68************************************************************944444444444442 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.48956114IPR017887Transcription factor TCP subgroup
PfamPF036344.4E-2856145IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MRECEDFQTK QEADRRHQSS VNLNQIQPST SSSLSRHWTS ALKNPRIVRD SRILGGKDRH  60
SKVCTVRGLR DRRIRLSVPT AVQLYDLQDG LGLNQPSKVI DWLLDAAKND VDKIPPLQFP  120
HGFNQFYPNL MFGSSSNCES LSGNQDLFKN CV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1861115155Putative transcription factor PCF6
5zkt_B6e-1861115155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546434.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546434.11e-110PREDICTED: transcription factor TCP5-like
SwissprotQ9FME32e-61TCP5_ARATH; Transcription factor TCP5
TrEMBLR0EXI81e-65R0EXI8_9BRAS; Uncharacterized protein
STRINGXP_010546434.11e-110(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-60TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]