PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010546427.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 276aa MW: 30240.1 Da PI: 10.0728 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.2e-14 | 97 | 142 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT eE+ ++ + k+lG +W+ I++++ ++Rt+ q+ s+ qky XP_010546427.1 97 KPWTVEEHRTFLAGLKKLGRSNWSDISKKFVTTRTPAQVASHAQKY 142 58*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.924 | 91 | 147 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.44E-15 | 93 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-15 | 94 | 146 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.6E-11 | 95 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-11 | 95 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-11 | 97 | 142 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.95E-9 | 98 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
SGHNRHNART CVNDVNKPCV KLFGVNISDP KPNVTALRKS VSLGNLQSLP GNAAAAAAED 60 SSLAGNAAAA VEDSGYLSDS LISSKKRKAA HEKKKGKPWT VEEHRTFLAG LKKLGRSNWS 120 DISKKFVTTR TPAQVASHAQ KYFIRQNING NRKRRASLFD MPLNDHEEDD SPQQPSTDAP 180 APSKTLAETD TTPSVKPTIL PREPVQDIAR YDILNPFQNL SMEYGRIYQT IPHDYYAPPY 240 LVFPQMFHSA KAGGFQTVHP SGIPAPRHIP TGMPPP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010546427.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010546427.1 | 0.0 | PREDICTED: transcription factor MYB1R1-like, partial | ||||
Swissprot | Q9FKF9 | 1e-88 | M5162_ARATH; Probable transcription factor At5g61620 | ||||
TrEMBL | D7MV43 | 7e-89 | D7MV43_ARALL; Myb family transcription factor | ||||
STRING | XP_010546427.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6021 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 1e-75 | MYB_related family protein |
Publications ? help Back to Top | |||
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