PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546276.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 293aa    MW: 31168.3 Da    PI: 6.5879
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.7e-091155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +W+ e+d  + +a   +  +   +W++Ia+ ++ g+t+ q+k+++ 
   XP_010546276.1 11 SWSREDDIAFENALVNHLDEtedRWEKIAADVP-GKTPDQIKEHYE 55
                     7************99999889************.**********95 PP
2Myb_DNA-binding43.85.8e-14119163347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_010546276.1 119 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 163
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.988762IPR017884SANT domain
SMARTSM007173.6E-8860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-61055IPR009057Homeodomain-like
SuperFamilySSF466891.94E-101066IPR009057Homeodomain-like
CDDcd001673.16E-81158No hitNo description
PfamPF002496.2E-71155IPR001005SANT/Myb domain
PROSITE profilePS5129417.201112168IPR017930Myb domain
SuperFamilySSF466898.22E-17114169IPR009057Homeodomain-like
SMARTSM007174.5E-11116166IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.5E-17116166IPR006447Myb domain, plants
CDDcd001671.25E-10119164No hitNo description
Gene3DG3DSA:1.10.10.605.1E-11119162IPR009057Homeodomain-like
PfamPF002497.2E-12119163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTVDEVSGSS SWSREDDIAF ENALVNHLDE TEDRWEKIAA DVPGKTPDQI KEHYELLVDD  60
VNRIESGCVP LPLYSSPEGS NSNEGDEGGT CKKGGGSHGG DSNHGGKSKS EQERRKGIAW  120
TEDEHRLFLL GLEKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH  180
DITNVGKEDI SSQQGPITGQ NNKGGAAGSG GGSTKSSNQA PSQPPPGPAI YGGSTIGQPV  240
GGPIVSAVGT PVNLQAPTHM AYGVHAGSVV PGAPPTTMAP IQYPVPHTPT THR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1412801179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546276.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546276.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-146SRM1_ARATH; Transcription factor SRM1
TrEMBLE4MWT41e-156E4MWT4_EUTHA; mRNA, clone: RTFL01-15-N01
TrEMBLV4LAV41e-156V4LAV4_EUTSA; Uncharacterized protein
STRINGXP_010546276.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-118MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]