PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010546170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 366aa MW: 41251.1 Da PI: 7.9827 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.3 | 1.8e-15 | 170 | 215 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hne ErrRRdriN+++ +L++llP+ K++K++iL ++e++k+Lq XP_010546170.1 170 HNESERRRRDRINQRMRTLQKLLPNG-----SKMDKVSILDDVIEHLKQLQ 215 *************************5.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.68E-9 | 159 | 219 | No hit | No description |
PROSITE profile | PS50888 | 17.339 | 165 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.01E-19 | 168 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.4E-18 | 169 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.4E-13 | 170 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-18 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MSSYGVRELT WENGQLTVHG LGEILQPNTS SRPIWTEPLG GCETLESVVH QAALQSKHPS 60 QDGPNHQPGN RDGPGARKRQ HWDGDLWFGL QEESLGLGQS LSASASLSND TRSMSWASFE 120 SCRNLKTART RGKDHVRSGS ETQETEGEEQ ETQEGRERSC RRRGKAAAIH NESERRRRDR 180 INQRMRTLQK LLPNGSKMDK VSILDDVIEH LKQLQSQVQF MSMRSNLPHQ MMMMMPPLPP 240 QSVLSMQHQK QQQQQQQQQQ QQQQQQQQQF QMALLTTMAR MGNALGGGYV HPPPPLMVPP 300 MTNRDCNNCS SAAMSDPYSA FFAQTMNMDL YNKMAAAIYK QQSDQTTQVT ATTNIPSHAS 360 DHEKGD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 177 | RRRGKAAAIHNESERRRR |
2 | 173 | 178 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting negatively in the phytochrome B signaling pathway under prolonged red light. Regulates PHYB abundance at the post-transcriptional level, possibly via the ubiquitin-proteasome pathway. May regulate the expression of a subset of genes by binding to the G-box motif. {ECO:0000269|PubMed:15486100, ECO:0000269|PubMed:18252845}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010546170.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By red light. Stable upon light exposure. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010546170.1 | 0.0 | PREDICTED: transcription factor PIF7-like | ||||
Swissprot | Q570R7 | 1e-134 | PIF7_ARATH; Transcription factor PIF7 | ||||
TrEMBL | A0A1J3H230 | 1e-135 | A0A1J3H230_NOCCA; Transcription factor PIF7 | ||||
STRING | XP_010546170.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14123 | 18 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61270.1 | 2e-94 | phytochrome-interacting factor7 |