PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010546077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 207aa MW: 24139.9 Da PI: 9.7842 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.2 | 2.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRrng+lKKA+ELSvLCdaev+ iifs++g+l+e+ss XP_010546077.1 9 KKIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVSAIIFSQKGRLFEFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 70.6 | 5e-24 | 81 | 171 | 7 | 98 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +e+ ++l+qe + + ++ie L+ ++R+llG+++ s+s++eL++L +q+++sl +iR++K +l+ eq+e+l++kek+l een++L +k+ XP_010546077.1 81 P-DTENCVQRLKQETTSMMRKIELLELQKRKLLGQGIASCSINELHELDNQIQRSLINIRARKAQLFNEQMEKLKEKEKMLLEENTKLCQKY 171 3.577789********************************************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.539 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.07E-42 | 3 | 78 | No hit | No description |
PRINTS | PR00404 | 3.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-32 | 3 | 80 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-24 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.723 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009838 | Biological Process | abscission | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0080187 | Biological Process | floral organ senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVSAIIFSQ KGRLFEFSSS 60 DTEKTIERYR KCTDYHQISK PDTENCVQRL KQETTSMMRK IELLELQKRK LLGQGIASCS 120 INELHELDNQ IQRSLINIRA RKAQLFNEQM EKLKEKEKML LEENTKLCQK YGKNSWEARV 180 QRDDSLVTTR SSEVKTDLII GLPERCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-19 | 1 | 84 | 1 | 83 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00576 | DAP | Transfer from AT5G62165 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010546077.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010546077.1 | 1e-150 | PREDICTED: MADS-box protein AGL42-like | ||||
Refseq | XP_010546078.1 | 1e-150 | PREDICTED: MADS-box protein AGL42-like | ||||
Swissprot | Q9FIS1 | 7e-91 | AGL42_ARATH; MADS-box protein AGL42 | ||||
TrEMBL | A0A0D3AYB0 | 3e-88 | A0A0D3AYB0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DIR3 | 3e-88 | A0A3P6DIR3_BRAOL; Uncharacterized protein | ||||
STRING | XP_010546076.1 | 1e-150 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 4e-84 | AGAMOUS-like 42 |