PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010546061.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 430aa MW: 47588.8 Da PI: 8.0246

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010546061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	111	171	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss XP_010546061.1 111 PTKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSS 171 67899*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-32	100	168	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.5E-32	113	169	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	115	169	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	117	153	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MMVVSKDPGI KLFGMEIPFP AAEEKGKRGG DGEDEKSAEE GTTTDESTES SEQESPEKKK 60 KKNDEEEEDH QNSWQDSKSK AGDEDENSKD HQGESIDSHD HQDSSKTLKK PTKILPCPRC 120 NSMDTKFCYY NNYNINQPRH FCKACQRYWT AGGTMRNVPV GAGRRKNKNS SPHYRHITIS 180 EALQAARIDS AHHHPGLKTN GRVLSFGLES QQQAPICESM ASVLKLGDQK IPNGARNDCP 240 NGYLTDESRA RKNSGFPEVN MAKNSNMNGF ACVPSIPWPY TWNPSIPPPG FFPPPGFAMP 300 FYPYWSIPML SPQSSSSSSQ KGSSSSGQNS PTLGKHSRDR TDNTADTTGR RNGSVFVPKT 360 LRIDDPDEAA KSSIWKTLGI RNEVMSKGVF KGFDQKGKKT KNNEETGEIS PVLLANPAAL 420 SRSIDFHERV

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MMVVSKDPGI KLFGMEIPFP AAEEKGKRGG DGEDEKSAEE GTTTDESTES SEQESPEKKK  60
KKNDEEEEDH QNSWQDSKSK AGDEDENSKD HQGESIDSHD HQDSSKTLKK PTKILPCPRC  120
NSMDTKFCYY NNYNINQPRH FCKACQRYWT AGGTMRNVPV GAGRRKNKNS SPHYRHITIS  180
EALQAARIDS AHHHPGLKTN GRVLSFGLES QQQAPICESM ASVLKLGDQK IPNGARNDCP  240
NGYLTDESRA RKNSGFPEVN MAKNSNMNGF ACVPSIPWPY TWNPSIPPPG FFPPPGFAMP  300
FYPYWSIPML SPQSSSSSSQ KGSSSSGQNS PTLGKHSRDR TDNTADTTGR RNGSVFVPKT  360
LRIDDPDEAA KSSIWKTLGI RNEVMSKGVF KGFDQKGKKT KNNEETGEIS PVLLANPAAL  420
SRSIDFHERV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010546061.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010546061.1	0.0	PREDICTED: cyclic dof factor 3-like
Swissprot	Q8LFV3	1e-143	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A1J3GKX5	1e-150	A0A1J3GKX5_NOCCA; Cyclic dof factor 3
STRING	XP_010546061.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-125	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]