PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010546013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | E2F/DP | ||||||||
Protein Properties | Length: 392aa MW: 43937.4 Da PI: 9.774 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 74.1 | 1.4e-23 | 22 | 87 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+++ ++v l+++a++L v +rRRiYDi+NVLe+++++++++kn+++wkg XP_010546013.1 22 RKQKSLGLLCTNFLALYNRDGIDMVGLDDAATKL---GV--ERRRIYDIVNVLESVGVLTRRAKNQYTWKG 87 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 80.4 | 1.6e-25 | 157 | 237 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+lltq+f+kl+ +se++i++l+e+ak L+ + +++k+RR+YDi+NVL+++nliek ++k++++w g XP_010546013.1 157 RREKSLGLLTQNFVKLFVCSEAQIISLDEAAKLLLGDahntsIMRTKVRRLYDIANVLSSMNLIEKthtseTRKPAFKWLG 237 689**************************************999************************9999*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.9E-26 | 18 | 88 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.42E-16 | 21 | 85 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.8E-28 | 22 | 87 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.3E-20 | 23 | 87 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.1E-23 | 154 | 238 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.6E-33 | 157 | 237 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.0E-20 | 159 | 237 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.75E-14 | 159 | 238 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MPPTLSTPAL DSSSSRHHSY SRKQKSLGLL CTNFLALYNR DGIDMVGLDD AATKLGVERR 60 RIYDIVNVLE SVGVLTRRAK NQYTWKGFGA IPGALKELKD EGIKDTFHRF YSNENEKVSD 120 DDDDEEDSSQ PYSSSQNDGS KLGSLPNSSA SSKIDNRREK SLGLLTQNFV KLFVCSEAQI 180 ISLDEAAKLL LGDAHNTSIM RTKVRRLYDI ANVLSSMNLI EKTHTSETRK PAFKWLGYSG 240 EPVHVPSNNF KQNETRKRVF GTDLTNVGVK KNKTASFALE NTSEKMLQMS KQTVSKKSSF 300 TKTSKVQESS IYGARSYQFG PFAPASATSH SFALDNNSKS VTELENLVSV HRPCYHNQVL 360 KDLFAHYMEA WKSWYGEVAR KKNPLAKTSQ HH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 1e-41 | 21 | 229 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010546013.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010546013.1 | 0.0 | PREDICTED: E2F transcription factor-like E2FE | ||||
Swissprot | Q8LSZ4 | 0.0 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | E4MXF0 | 0.0 | E4MXF0_EUTHA; mRNA, clone: RTFL01-26-N13 | ||||
TrEMBL | V4LPM2 | 0.0 | V4LPM2_EUTSA; Uncharacterized protein | ||||
STRING | XP_010546013.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6304 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-167 | DP-E2F-like 1 |
Publications ? help Back to Top | |||
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