PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010545948.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NF-YC | ||||||||
Protein Properties | Length: 234aa MW: 25788 Da PI: 5.0679 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.8 | 2.2e-55 | 47 | 151 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw+ q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trt+ifdfl XP_010545948.1 47 QLQMFWSFQrqeIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTEIFDFL 141 89****9887789********************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivprde+k XP_010545948.1 142 VDIVPRDEIK 151 *******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.84E-33 | 39 | 141 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.1E-37 | 61 | 133 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-20 | 69 | 132 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MENQQPPSSS FPPPPPSAAV VPSHPVSGAG EIPYHHLLHH QQHQQEQLQM FWSFQRQEIE 60 HVNDFKNHQL PLARIKKIMK ADEDVRMISA EAPILFAKAC ELFILELTIR SWLHAEENKR 120 RTLQKNDIAA AITRTEIFDF LVDIVPRDEI KDEAALGGVV TPTASGVPYY YPPMGQPAGP 180 GGMMIGTPAV DPNGVYVQQP SQAWQSVWQT SATGDEVSYG SGESSGQGNL EGQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-53 | 55 | 147 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 125 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010545948.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019058613.1 | 1e-174 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9SMP0 | 1e-113 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | R0FL35 | 1e-121 | R0FL35_9BRAS; Uncharacterized protein | ||||
STRING | XP_010545948.1 | 1e-174 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 6e-95 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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