PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545891.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CPP
Protein Properties Length: 413aa    MW: 46969.7 Da    PI: 7.8756
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545891.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.76.5e-1575114242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     + kgC+C++skClk+YCeCf++g++Cs  C C dC+N+ e+
  XP_010545891.1  75 KYKGCHCRQSKCLKLYCECFSSGVFCSG-CDCVDCHNNFEN 114
                     679*************************.********9875 PP
2TCR50.83.4e-16159196441
             TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     +gC+Ck+++ClkkYCeCf+a+ +Cse+CkC +CkN ee
  XP_010545891.1 159 RGCKCKRTECLKKYCECFQANLFCSEHCKCINCKNVEE 196
                     79*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-1774114IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.64275196IPR005172CRC domain
PfamPF036387.3E-1277111IPR005172CRC domain
SMARTSM011141.1E-15156197IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.9E-12159194IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MLENRADVVS DVIVPEDRPR QLVFTKLGLS PVVSLSPLRE LPLFPELSHF PSKKPRRVTP  60
EPITDTDWNR RTLRKYKGCH CRQSKCLKLY CECFSSGVFC SGCDCVDCHN NFENWDLRKV  120
AVDNILFRNP NAFKGKLFHY PSDKQDETAD AAKVVIPMRG CKCKRTECLK KYCECFQANL  180
FCSEHCKCIN CKNVEEEIQT DVSVKGRNHS KLLFEFGKPE RKTLRSSEKN KINMERDELR  240
KQAKSSTATP YDATRDLLRL SMSGSSKLPY RKKKSPLGDT ILLPDMVDIC SLLLSASVSA  300
KAYAGNTTLL ELQPNMEEET RNLQELDYEQ DICIRQGGDT NENAEEMVHS TGRMIEMIDT  360
LSNSKDLSKR DSDDGNGGDT YIEQERAVLE TLRDCLRKLI VVGYITGSKK TSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-19671962123Protein lin-54 homolog
5fd3_B2e-19671962123Protein lin-54 homolog
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545891.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545891.10.0PREDICTED: protein tesmin/TSO1-like CXC 8
STRINGXP_010545891.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148441520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16160.15e-80Tesmin/TSO1-like CXC domain-containing protein