PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010545847.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | SBP | ||||||||
Protein Properties | Length: 187aa MW: 21493.2 Da PI: 10.0119 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.9 | 2.6e-42 | 69 | 144 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqve+C+adl eak+yhrrhkvCevh+ka++++v+g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++ XP_010545847.1 69 CQVEKCTADLMEAKQYHRRHKVCEVHAKATAAMVAGVRQRFCQQCSRFHELLEFDEAKRSCRRRLAGHNERRRKSS 144 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.8E-32 | 64 | 130 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.035 | 66 | 143 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-38 | 68 | 147 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-31 | 69 | 142 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MQKMESKRRP GQGYLKDKAT SSHPVEEETE KELEEEEEVG GEEEKKKKVM ERVRGSSGSS 60 SDRVSSRLCQ VEKCTADLME AKQYHRRHKV CEVHAKATAA MVAGVRQRFC QQCSRFHELL 120 EFDEAKRSCR RRLAGHNERR RKSSGDSFGE GSGRRGVSGQ LMQTQERNRV EMTLPMSNPS 180 FKRSQIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-42 | 55 | 142 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00359 | DAP | Transfer from AT3G15270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010545847.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156. {ECO:0000269|PubMed:16914499}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019058538.1 | 1e-119 | PREDICTED: squamosa promoter-binding-like protein 5 | ||||
Swissprot | Q9S758 | 1e-89 | SPL5_ARATH; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | R0G7J6 | 2e-90 | R0G7J6_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010545847.1 | 1e-133 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM868 | 28 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 2e-72 | squamosa promoter binding protein-like 5 |
Publications ? help Back to Top | |||
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