PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010545496.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ERF | ||||||||
Protein Properties | Length: 246aa MW: 27396.6 Da PI: 9.7523 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 31 | 82 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp + + r++lg+f++aeeAa+a++ a+++l+g+ XP_010545496.1 31 PRYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAEEAARAYDTAARRLRGP 82 68********.**********743...5**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-13 | 31 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.73E-32 | 31 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 32 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-38 | 32 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 32 | 91 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.25 | 32 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-11 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-11 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MRRGRGSSAV AGATAVVPVA TANHPRSIKE PRYRGVRKRP WGRFAAEIRD PLKKSRVWLG 60 TFDSAEEAAR AYDTAARRLR GPKAKTNFPI DCSRSSPQHL NHNHYQQQQN PNLCSFPFPA 120 NENRIDPFMD HRLYTGNFPE QFPIISRPAS SSMSSTVESF SGPRPPANQT TSVAKPTKRY 180 PRTPPVVPED CHSDCDSSSS VVDDGDDIAS SSRRKLPFQF DLNLPPANGV DFFVVGDDFH 240 CTDLRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 29 | 90 | 2 | 64 | ATERF1 |
3gcc_A | 2e-21 | 29 | 90 | 2 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00366 | DAP | Transfer from AT3G20310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010545496.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010545496.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 3 | ||||
Refseq | XP_010545497.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 3 | ||||
Refseq | XP_010545498.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 3 | ||||
Refseq | XP_010545500.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9LDE4 | 8e-85 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A1J3DJJ7 | 8e-91 | A0A1J3DJJ7_NOCCA; Ethylene-responsive transcription factor 7 | ||||
STRING | XP_010545496.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 4e-57 | ethylene response factor 7 |
Publications ? help Back to Top | |||
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