PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545483.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 523aa    MW: 58239.9 Da    PI: 6.1266
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545483.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.57.3e-1361545232374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     + lL ecA+av++ d++++++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +     e l+++++++e++P++kf++ 
  XP_010545483.1 154 KGLLCECAKAVENYDQTMVDWLITQLQQMVSVSGEPVQRLGAYMLEGLIARLASSGSSIYKALQCKEPT---GPELLSYMHILYEACPYFKFGYE 245
                     568*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++++s   ++  le +g+rL+++Ae ++vpfefn  +a +  ++
  XP_010545483.1 246 SANGAIAEAVKNERFVHIIDFQISQGAQWISLIRALGARPGGPPKIRITGIDDSRSAfaRQGGLEIVGQRLSRLAELCRVPFEFNG-AALSGPEV 339
                     *****************************************************9888999**************************.899***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++e+L v++gEa+aVn+ l lh+++desvs+e++rd++L+lvk+lsP+vv++veqea++n+++F+ rf+e++++y a+f+s+++klpr+++eri+
  XP_010545483.1 340 QIEHLGVRQGEAIAVNFPLVLHHMPDESVSVENHRDRLLRLVKRLSPRVVTLVEQEANTNTAPFFPRFVETMNHYLAVFESIDVKLPRDHKERIN 434
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE+++l+reivn+vaceg er+erhe l+kWr+r+++aGFkp+pls+++++++k+l++ +++  y++ee++++l+lgWk+ pL++ +aWr
  XP_010545483.1 435 VEQHCLAREIVNLVACEGIEREERHELLGKWRSRFHMAGFKPYPLSSFVNATIKALMESYSD-KYTLEERDEALYLGWKNLPLITSCAWR 523
                     *************************************************************5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.991127504IPR005202Transcription factor GRAS
PfamPF035142.5E-133154523IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MEATQKHIVK DGSAILYNQS MQGPNSYYQH PSQHVNISVQ TFEPYSTLES SSSATQARSC  60
QNNSSSTTSF SANKSPELHR SPDDRSGSPI SGSSVTNNDA DISFMLKELE TAMLGPDLDS  120
FGTGDNDSGL SGGQNTTPSA MYRCMEMISR GDLKGLLCEC AKAVENYDQT MVDWLITQLQ  180
QMVSVSGEPV QRLGAYMLEG LIARLASSGS SIYKALQCKE PTGPELLSYM HILYEACPYF  240
KFGYESANGA IAEAVKNERF VHIIDFQISQ GAQWISLIRA LGARPGGPPK IRITGIDDSR  300
SAFARQGGLE IVGQRLSRLA ELCRVPFEFN GAALSGPEVQ IEHLGVRQGE AIAVNFPLVL  360
HHMPDESVSV ENHRDRLLRL VKRLSPRVVT LVEQEANTNT APFFPRFVET MNHYLAVFES  420
IDVKLPRDHK ERINVEQHCL AREIVNLVAC EGIEREERHE LLGKWRSRFH MAGFKPYPLS  480
SFVNATIKAL MESYSDKYTL EERDEALYLG WKNLPLITSC AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5915952225378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545483.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545481.10.0PREDICTED: scarecrow-like protein 5
RefseqXP_010545482.10.0PREDICTED: scarecrow-like protein 5
RefseqXP_010545483.10.0PREDICTED: scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A1J3EW770.0A0A1J3EW77_NOCCA; Scarecrow-like protein 5
STRINGXP_010545481.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]