PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010545390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28164.2 Da PI: 8.0362 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.2 | 7.8e-17 | 9 | 52 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +ri n+ +r +t+ kR++ +lKKA E S+LC++e +++i +++ XP_010545390.1 9 ERIANEKKRVTTYKKRKACLLKKADEFSTLCGVETCLLISGPDR 52 69***************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.189 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-14 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-17 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.38E-20 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 4.6E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.5E-15 | 10 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MGRKMLKMER IANEKKRVTT YKKRKACLLK KADEFSTLCG VETCLLISGP DRTAAEAEPE 60 TWPADKNSVR AIINKYIDTG PNSCRKSCQI HDVLSERSKN MEKKTPPKIK YCTWDEKLRG 120 CSQEELCRIL GNIDENIDKA QRFVSVLEQQ PVVPWSTLGH VGLPFSNPHD QVTVDPVKAL 180 MMLRCCNGYN FFPGICIDQE VQYGSVPIQG PAYFEPHWTQ ENIVFNGTDQ FISNRVNKWE 240 NSGNDQM |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010545390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010545390.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
STRING | XP_010545390.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5948 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G55690.1 | 1e-43 | M-type_MADS family protein |