PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545326.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 439aa    MW: 49082.3 Da    PI: 8.5681
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.4e-1769128155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_010545326.1  69 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDEEEAAARAYDLAALKYWG 128
                     57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-1369128IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1769138IPR016177DNA-binding domain
CDDcd000188.01E-1169138No hitNo description
PROSITE profilePS5103220.04770136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1570137IPR001471AP2/ERF domain
SMARTSM003803.2E-2570142IPR001471AP2/ERF domain
PRINTSPR003672.9E-57182IPR001471AP2/ERF domain
PRINTSPR003672.9E-5118138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MASISSLDPG PKAEVGCSGG GGGESSETVG ANDEMMLYRG FKKAKKERGC TAKERISKMP  60
PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQVYLGAYD EEEAAARAYD  120
LAALKYWGAA TLINFPVSDY TRDLEEMQNV SREEYLASLR RKSSVFSRGT AKHRGIPSRW  180
DASASRMHRP EYFSNVHYGV DDERVTEGDF PGSFCLERKI DMTGYIKWWG VKKTRQTEDT  240
KLEDIGRELK TLEPASLTTE PYKEPSLGVP CEKRKERASS SSSTSPSSSS ALSILSQSPA  300
YKNLQEKIKE NDENTDQKNI VQRDKSYGKA MEKKPVVSHG SSGLCPITSI LSAPLLTNCS  360
PLDPLADAAV TWTPFVPSLL PRGSSHTSEV RVYLSLTCSV IHFIVFLFFC FYSIGIHTHY  420
PSSFYMVESE ILSTHPTYE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545326.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-171AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1J3JTZ51e-176A0A1J3JTZ5_NOCCA; AP2-like ethylene-responsive transcription factor
STRINGXP_010545326.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-165AP2 family protein