PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010545325.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 400aa MW: 44923.3 Da PI: 7.4509

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010545325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.1	1.5e-35	41	183	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 lp+G++F+Ptd+el+ e+L++kv+g++ + + +i+ +i++++P++Lp v+ + + +fF++++k+y+tg+rk+r+ XP_010545325.1 41 LPAGMKFDPTDQELI-EHLEAKVKGNDghcrshplI---DefipTIQGEdGICYTHPQKLP-GVTRDGLSRHFFHRQSKAYTTGTRKRRKingds 130 799**********.99*****776665543...144334776646******.555666799**************856665 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfyk..grapkgektdWvmheyrl 128 +++ +W++tgk++ v++ +g+ +g+kk+Lv+y+ g+++++ekt+Wvmh+y+l XP_010545325.1 131 gAAETRWHKTGKTRLVMV-NGQRKGCKKILVLYEnfGKNRRPEKTSWVMHQYHL 183 555889********.9999******6336999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-39	34	202	IPR003441	NAC domain
PROSITE profile	PS51005	33.064	41	202	IPR003441	NAC domain
Pfam	PF02365	2.7E-16	42	183	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MKKSNSDLIG SKLEEHGFLG SNHCPGCGHK LQIAKPDWMG LPAGMKFDPT DQELIEHLEA 60 KVKGNDGHCR SHPLIDEFIP TIQGEDGICY THPQKLPGVT RDGLSRHFFH RQSKAYTTGT 120 RKRRKINGDS GAAETRWHKT GKTRLVMVNG QRKGCKKILV LYENFGKNRR PEKTSWVMHQ 180 YHLGVDEEER DGELVVSKIF YQTQPRQCGW PHDNIDLPRM INGTRSITSK EMGTATDARV 240 YSRVGDDISA VDFSRVMPFR NGFDHHECEN NGGSSSSSSS SHHHPYLMHD HGHYHQHHQL 300 GAMRSGLHIS SSSSSSSLHP STIRTIMSHS ALEHNLVLNA DEQSVNVPGI ILPNMPFQQE 360 YLEGRCDSGL EELIMGCNSA TFIKDGNSEP NPLEAEWSKY

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MKKSNSDLIG SKLEEHGFLG SNHCPGCGHK LQIAKPDWMG LPAGMKFDPT DQELIEHLEA  60
KVKGNDGHCR SHPLIDEFIP TIQGEDGICY THPQKLPGVT RDGLSRHFFH RQSKAYTTGT  120
RKRRKINGDS GAAETRWHKT GKTRLVMVNG QRKGCKKILV LYENFGKNRR PEKTSWVMHQ  180
YHLGVDEEER DGELVVSKIF YQTQPRQCGW PHDNIDLPRM INGTRSITSK EMGTATDARV  240
YSRVGDDISA VDFSRVMPFR NGFDHHECEN NGGSSSSSSS SHHHPYLMHD HGHYHQHHQL  300
GAMRSGLHIS SSSSSSSLHP STIRTIMSHS ALEHNLVLNA DEQSVNVPGI ILPNMPFQQE  360
YLEGRCDSGL EELIMGCNSA TFIKDGNSEP NPLEAEWSKY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010545325.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010545325.1	0.0	PREDICTED: NAC domain-containing protein 78 isoform X1
Swissprot	Q9M0F8	1e-113	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A067EL13	1e-133	A0A067EL13_CITSI; Uncharacterized protein
STRING	XP_010545324.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56620.1	1e-116	NAC domain containing protein 99

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]