PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545177.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 556aa    MW: 62475 Da    PI: 4.541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.41.7e-054114412055
                     HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     f +Lr ++P       +K++K++iL  ++eY+k+L+
  XP_010545177.1 411 FITLRAMVPFV-----TKMDKVSILGDTIEYVKQLR 441
                     66899999997.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-546185IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508888.6391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-7410450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.20E-6410445No hitNo description
SuperFamilySSF474591.83E-8410457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MGSRCLQEML QAAVQSVRWT YSLFWQFCPQ QRGLVWGEGY YNGAIKTRKT VQPAEETAEE  60
AAGQRSHQLR ELYHSLLAAE DTKRPSTALS PEDLTESEWF YLMCASFSFP PPSGLPGKAY  120
ARKQHVWLSG ANEVDCKTFS RSILAKSAKI QTVVCIPLLD GVVELGTTDK VEEDLGFIYH  180
IKSFFNDQPP PPASKPALSE HSTSNPSSLP PTISYSEPFV DDAAGKREEE GEVDEDEDDE  240
DEEEEEVDED EDEDEDNDEP SKLMQVDTMS TEDLQFGSPE EVSNNLDSDF HMLAVSCSPT  300
TAVNAVEPWP DHLNSTPLQP HPIELETTRE DEDSNYSLTV SAVLQAQRSD LFSSLACVSQ  360
SSFARWKMED AYHTTERVRN GGASQSVLKY ILLSLPYLHA KPRSGSPPPR FITLRAMVPF  420
VTKMDKVSIL GDTIEYVKQL RARIQDLEVH SRIIETEKHS QKRMRPSRKN PDSSEMVEVS  480
IIESDALLEM RCEYREGLLI DVLQVLRELR IETTAVHSAV NGGVFTAEIR AKVKDTLRGK  540
KVTIIDVKRA IRQVLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-2061869193Transcription factor MYC3
4rqw_B2e-2061869193Transcription factor MYC3
4rs9_A2e-2061869193Transcription factor MYC3
4yz6_A2e-2061869193Transcription factor MYC3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545177.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545177.10.0PREDICTED: truncated basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A061DRT40.0A0A061DRT4_THECC; BHLH-like DNA binding protein
TrEMBLA0A445LP580.0A0A445LP58_GLYSO; Basic helix-loop-helix protein A isoform A
TrEMBLK7K8E70.0K7K8E7_SOYBN; Uncharacterized protein
STRINGXP_010545177.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.15e-95bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]