PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010545170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | WRKY | ||||||||
Protein Properties | Length: 213aa MW: 23960.2 Da PI: 8.3049 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.6 | 1.4e-29 | 45 | 103 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC++ gC++kk++er+++d ++++itY+++Hnh+ XP_010545170.1 45 SDLWSWRKYGQKPIKGSPYPRGYYRCSTCkGCSAKKQIERCRTDASLLIITYSNTHNHP 103 699***********************9877****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 29.448 | 39 | 105 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.9E-30 | 39 | 103 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-25 | 41 | 103 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-33 | 44 | 104 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-24 | 46 | 103 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MFLVSQAIVE YMRTSKKTAE KKKTVVTVKI GEKAESLFKN EGLPSDLWSW RKYGQKPIKG 60 SPYPRGYYRC STCKGCSAKK QIERCRTDAS LLIITYSNTH NHPDQGSNPI AQIPLHHPRK 120 EQNLYKPIIF PARESENDGS ADTESMMFGD VLKTGRFPVA REPIGSDPTS RPVVGAEKEN 180 DFFDELDELP MSSGFTRLAQ NDAVFNEEIP VPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-20 | 46 | 103 | 18 | 77 | Disease resistance protein RRS1 |
5w3x_D | 4e-20 | 46 | 103 | 18 | 77 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010545170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010545170.1 | 1e-160 | PREDICTED: probable WRKY transcription factor 65 | ||||
TrEMBL | A0A0D2U2T5 | 1e-51 | A0A0D2U2T5_GOSRA; Uncharacterized protein | ||||
STRING | XP_010545170.1 | 1e-160 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15371 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 7e-33 | WRKY DNA-binding protein 35 |