PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545151.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 317aa    MW: 35448.8 Da    PI: 4.7783
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545151.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-05230252123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ Cg++F++   L  H  +H
  XP_010545151.1 230 YKCETCGRVFKSYQALGGHRASH 252
                     9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-5229257No hitNo description
PfamPF139125.4E-11230254IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.24230257IPR007087Zinc finger, C2H2
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKEEEIAETG QGSHVTLVRL LEMERYKSRL RFNGRALGGH VRSHVFGLSA KRERCGVEED  60
DGEEEEKRPS PLGDETESGE LLPSSSAFSS SSSSDEEEED DVAVVDDHGS IASVLLQTGE  120
SETDSSRIKL TRRRSKRNQK LGELDADKAK KLKTSQLGFR STVPVPEPLS SASDTASTEE  180
DLAFCLVMLS RDKWKKESKP KEVQEDDQDD DNDNGEEEDR TSKNRARGEY KCETCGRVFK  240
SYQALGGHRA SHKKNRVCRT DQHQWRGTGY EVGNAVAEKK IHECTICLRR FIDLNLPAPT  300
EDDDTSQAEA SVVFDEC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131152RRRSKRNQKLGELDADKAKKLK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545151.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545151.10.0PREDICTED: zinc finger protein ZAT9-like
SwissprotQ9M2028e-61ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLD7LRS34e-62D7LRS3_ARALL; Zinc finger family protein
STRINGXP_010545151.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-56C2H2-like zinc finger protein