PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545000.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 348aa    MW: 37101 Da    PI: 8.3977
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.39.7e-4046107263
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                     k++al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss
  XP_010545000.1  46 KDQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 107
                     7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-273998IPR003851Zinc finger, Dof-type
PfamPF027011.5E-3347104IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.13450104IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105288IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNTAQWPQIV VKPIDEIVTN RCLKPTAPPA MTAVGAAAER KTRPQKDQAL NCPRCNSTNT  60
KFCYYNNYSL TQPRYFCKTC RRYWTEGGSL RNIPVGGGSR KNKRSSSSSN PPSSSPKKHL  120
FVSRAPPQQP PSCQNPKITD THEAKGLNSA FSQAIGNAHE AKETNLAFSQ GFGNAHNSVS  180
EFLQMPNIIK NPLVSPSSSS AFELLGISAS SSSSSSASSC STFMALPTAH DPSVYAAAVS  240
GFGLNYPPMQ EFIRPALGFS LDPHDPLNRE DGPNATTTSG RLLFPFENLK LPVSSSSTNS  300
GGGGGDNGID NSNHHQGSTD EHDREEQADQ SGGFWNGMLG GGGLGGSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545000.10.0PREDICTED: dof zinc finger protein DOF1.8-like isoform X2
SwissprotQ84JQ81e-101DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBLD7KS751e-107D7KS75_ARALL; Uncharacterized protein
STRINGXP_010544994.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.15e-93Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]