PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544994.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 349aa    MW: 37230.1 Da    PI: 8.2183
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544994.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.29.7e-4047108263
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                     k++al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss
  XP_010544994.1  47 KDQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 108
                     7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-274099IPR003851Zinc finger, Dof-type
PfamPF027011.5E-3348105IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.13451105IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105389IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MNTAQWPQEI VVKPIDEIVT NRCLKPTAPP AMTAVGAAAE RKTRPQKDQA LNCPRCNSTN  60
TKFCYYNNYS LTQPRYFCKT CRRYWTEGGS LRNIPVGGGS RKNKRSSSSS NPPSSSPKKH  120
LFVSRAPPQQ PPSCQNPKIT DTHEAKGLNS AFSQAIGNAH EAKETNLAFS QGFGNAHNSV  180
SEFLQMPNII KNPLVSPSSS SAFELLGISA SSSSSSSASS CSTFMALPTA HDPSVYAAAV  240
SGFGLNYPPM QEFIRPALGF SLDPHDPLNR EDGPNATTTS GRLLFPFENL KLPVSSSSTN  300
SGGGGGDNGI DNSNHHQGST DEHDREEQAD QSGGFWNGML GGGGLGGSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544994.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544994.10.0PREDICTED: dof zinc finger protein DOF1.8-like isoform X1
SwissprotQ84JQ81e-104DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBLD7KS751e-110D7KS75_ARALL; Uncharacterized protein
STRINGXP_010544994.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149321720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.12e-95Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]