PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544992.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 302aa    MW: 32830.2 Da    PI: 8.3066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-1978126355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ + k++g
  XP_010544992.1  78 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREAIKIRG 126
                     9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-2277135IPR016177DNA-binding domain
PROSITE profilePS5103224.05277134IPR001471AP2/ERF domain
SMARTSM003805.2E-3977140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3277135IPR001471AP2/ERF domain
CDDcd000189.05E-3378136No hitNo description
PRINTSPR003677.7E-127889IPR001471AP2/ERF domain
PfamPF008473.2E-1278126IPR001471AP2/ERF domain
PRINTSPR003677.7E-12100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MCGGAIISDF IIRNRGQSVS AADIWPNSFF AKINGGQFDP DPARLGESGR VSLKRSQPVS  60
GGGQEAAEKP KRQRKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTA EEAARAYDRE  120
AIKIRGKKAK VNFPNDDTHF TINHRKNGQP CHLNPPPNSN PIPNRNYHPV ADSSSTSFGF  180
GNGLNQIPVA DSCNTNPVQS GVHSDSAAEE NSGSNSACEP ANSYSPPAIN GGETKAKEEK  240
NEVQRLSEEL MAYEDYMKFY QIPYLEGQSS TATDASAQVS VVGNLWNFED AMAASPVASG  300
SA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2278134663ATERF1
3gcc_A6e-2278134663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873KPKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544992.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544992.10.0PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLA0A067K8U52e-95A0A067K8U5_JATCU; Uncharacterized protein
STRINGXP_010544992.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-35ERF family protein