PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544980.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 457aa    MW: 49924.3 Da    PI: 4.446
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd ll  ++  +G g+W++ ++  g++R++k+c++rw +yl
   XP_010544980.1 14 KGRWTAEEDRLLSSYILSHGEGSWRSLPKNAGLKRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.26e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E+e++v++   lG++ W++Ia+ ++ gRt++++k++w+++l
   XP_010544980.1  67 RGNITPQEEEIIVKLQSSLGNR-WSLIASNLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.847961IPR017930Myb domain
SuperFamilySSF466894.69E-2711108IPR009057Homeodomain-like
SMARTSM007171.7E-111363IPR001005SANT/Myb domain
PfamPF002499.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-211568IPR009057Homeodomain-like
CDDcd001673.78E-91661No hitNo description
PROSITE profilePS5129424.82662116IPR017930Myb domain
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1367112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2469116IPR009057Homeodomain-like
CDDcd001674.19E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGRAPCCEKV GMKKGRWTAE EDRLLSSYIL SHGEGSWRSL PKNAGLKRCG KSCRLRWINY  60
LRADVKRGNI TPQEEEIIVK LQSSLGNRWS LIASNLPGRT DNEIKNYWNS HLSRKLHSFV  120
RKPTVSQEVA AIVMNAVKNT PPPPPPKRRG RTSRSSMKVK NPNPKNSTRK SKKVFATKTK  180
PPVDDVEPEE NAKTSGTGSR VCEVGNAEKG EEREEDAFMS LSSSSDCGAD ALIGVMADFG  240
PYGYGDDIDC DNDINGEDGA LSFDDIFDAS LLLDESELYN PKVNEPIRGS GDEKESVSDQ  300
DFAGFGDLAG GICSSTSSWS GEGMQSCPSV ESFMSFEKVN DAAGEFVGSV SDQAFVGNEN  360
LDGGCCLSSW TGDAALQSCP SVESLLNQDL VSDMTDDFID WDSVLQGGHN LRDEKESPDS  420
FLSWLLDGEE TAFGQLGDFG EPLDREKENA MVTWLIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-231211625128MYB TRANSFORMING PROTEIN
1mse_C4e-23141164105C-Myb DNA-Binding Domain
1msf_C4e-23141164105C-Myb DNA-Binding Domain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145151PKRRGRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544980.10.0PREDICTED: transcription factor MYB12-like
STRINGXP_010544980.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-104myb domain protein 12