PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544921.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 435aa    MW: 48606.4 Da    PI: 7.3081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.7e-07253296855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +Er  R++i++++  Lr llP++    + K  K++ L +A+eY ++Lq
  XP_010544921.1 253 AEREQRHEIKKRMIALRNLLPNN----CNKDKKSSLLDEAIEYTRKLQ 296
                     7999******************7....689*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-10242304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.57E-8243300No hitNo description
SuperFamilySSF474597.33E-11244313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.884245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-5252296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0077253301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MEEDPFAPLS NFISKRLEEH EYMELVWENG QILTRGRRSN VYSTRNPPST TSLFLDLHEA  60
DKNLGDTQVV PVGENTREET DKSTKEKIKL SVAAHNKKVA IHVEPKTEVG LPAHKILVKE  120
RDGGRVESTV HSLKAMADQT NHKELEFSPP DAQSVAMGRY NRYREKVGSV KEENESSDSL  180
GWSTQLCSSS FSICSRGTSQ DPIISSPRRT SAESEGSIHL STNTDVESED EGPQVPARKT  240
TKRKQSRDFD DLAEREQRHE IKKRMIALRN LLPNNCNKDK KSSLLDEAIE YTRKLQLQIQ  300
YISQFRLMSM ANGFAAPQMM YYSPLVHYSP LGLGFGTPPF VSSPVPGPAL PNQPGPVPFS  360
SFSFYPIEPS SQQCFRPAAS STQFQRSDSV SSLDNSQKQS SSGEWTIPTS IRSRANIQNM  420
LMTKQGNECS WGGAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237244RKTTKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544921.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544921.10.0PREDICTED: transcription factor PIL1 isoform X1
STRINGXP_010544921.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139371725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.15e-46phytochrome interacting factor 3-like 1