PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544911.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 416aa    MW: 46132.4 Da    PI: 6.0757
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.31.1e-116514102373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfsh 95 
                      +lLl+cAe v++++l++a++lL ++se++sp +++ +R++ayf++AL+ar+++s+ + y  l+++++ ++  s++ +aal+ ++ vsP++kfsh
  XP_010544911.1  51 LRLLLQCAEYVATENLQEASSLLLEISEISSPFASSPERVVAYFAQALQARVFSSCLGAYTPLTAQRSLTMAqSQKIFAALQSYNSVSPLIKFSH 145
                     689************************************************************87777766636777778899************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rled 188
                     +taNq I eavege+rvHiiD+d++qGlQWpaL++ LasRp++  s+RiTg+gs    s+  l +tg+rLa+fA++l++pfefn++  k  +l++
  XP_010544911.1 146 FTANQVIFEAVEGEDRVHIIDLDVMQGLQWPALFHILASRPRKLRSVRITGFGS----SSVLLASTGRRLADFAASLDLPFEFNPVEGKlgDLTE 236
                     ******************************************************....99*************************9555558999 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseer 282
                     l+l++L v+++E+++V+++   hrl+d ++s +      L+++++++P++v+vveq++++ ++ sFl rf+eal++ysalfd+l +++ +e+ er
  XP_010544911.1 237 LSLSQLGVRSDESVVVHWMQ--HRLYDVTGSDAG----ALEALRRIRPRLVTVVEQDLSRgGERSFLGRFVEALHHYSALFDALGEGMEEENAER 325
                     9******************9..****99999999....*********************98999******************************* PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +vE++l+grei+nvv  +g++      ++e+W e l+++GF+pv+l+ + a+qa lll +++++gy++ e++g+l lgWkd +L+++SaW
  XP_010544911.1 326 YTVEEQLFGREIKNVVVGRGER------KVERWWEELSRVGFRPVSLRGNPAAQAGLLLGMMPWKGYSLVEDNGTLRLGWKDLSLLTASAW 410
                     ********************98......7889*********************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.43524391IPR005202Transcription factor GRAS
PfamPF035144.0E-11451410IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MKAKRLDRDF PPSDDPPAAK RRKDVDSDLH NPHDTAVAAA DGVESTAIRL LRLLLQCAEY  60
VATENLQEAS SLLLEISEIS SPFASSPERV VAYFAQALQA RVFSSCLGAY TPLTAQRSLT  120
MAQSQKIFAA LQSYNSVSPL IKFSHFTANQ VIFEAVEGED RVHIIDLDVM QGLQWPALFH  180
ILASRPRKLR SVRITGFGSS SVLLASTGRR LADFAASLDL PFEFNPVEGK LGDLTELSLS  240
QLGVRSDESV VVHWMQHRLY DVTGSDAGAL EALRRIRPRL VTVVEQDLSR GGERSFLGRF  300
VEALHHYSAL FDALGEGMEE ENAERYTVEE QLFGREIKNV VVGRGERKVE RWWEELSRVG  360
FRPVSLRGNP AAQAGLLLGM MPWKGYSLVE DNGTLRLGWK DLSLLTASAW LSPPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1445641024377Protein SCARECROW
5b3h_D1e-1445641024377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544911.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544911.10.0PREDICTED: scarecrow-like protein 23 isoform X1
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A1J3DR520.0A0A1J3DR52_NOCCA; Scarecrow-like protein 23
STRINGXP_010544911.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]