PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544887.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 342aa    MW: 38200.6 Da    PI: 8.9048
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544887.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31031.6e-3254157198
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae+h    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_010544887.1  54 FDKVVTPSDVGKLNRLVIPKQHAERHfpldSSSNEKGLLLNFEDRTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFHRGvGEtGK 148
                     89****************************66677899*************************************************65466555 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                       l++ +++
  XP_010544887.1 149 NMLFIDWRK 157
                     556666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-4245164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-3151159IPR015300DNA-binding pseudobarrel domain
CDDcd100178.40E-2652148No hitNo description
PROSITE profilePS5086314.74854159IPR003340B3 DNA binding domain
SMARTSM010192.3E-2354159IPR003340B3 DNA binding domain
PfamPF023621.3E-2954158IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MTSSSTERSE INFPDSMMSL SVTRIQGDRE EEEAKALELL GGSSSGNTER EHMFDKVVTP  60
SDVGKLNRLV IPKQHAERHF PLDSSSNEKG LLLNFEDRTG KSWRFRYSYW NSSQSYVMTK  120
GWSRFVKDKK LDAGDIVSFH RGVGETGKNM LFIDWRKRPK VPDPTSIAHF AGTMFPRFYA  180
FPQPVVSIPR NYGNFQNFSH ESYNLSYQNR HHYRFPRDLG YGYGDSMGGY YLRSLERNPA  240
ETVVFDSVPV VTARAQPIVA AAGKRLRLFG VDMDCNSCMD QEESSSSGGS VPRGAAGTAS  300
SSSSLQLRLA SSEESSMVAA AAADDHHFSK KGKSSLSLDL HR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-69481612116B3 domain-containing transcription factor NGA1
5os9_B7e-69481612116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544887.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-104NGA1_ARATH; B3 domain-containing transcription factor NGA1
SwissprotQ9M2681e-104NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A1J3IYX31e-112A0A1J3IYX3_NOCCA; B3 domain-containing transcription factor NGA1
STRINGXP_010544887.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-90B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]