PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010544860.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 339aa MW: 36681.4 Da PI: 9.334

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010544860.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	8.2e-39	53	114	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk++ss XP_010544860.1 53 PHEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRTSS 114 67899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-29	52	111	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.2E-33	55	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEQIIPDNTA QRTCTTSARP NGIIFNTNNA GPGGGGGGGS GNGAASAERK ARPHEKLNCP 60 RCNSTNTKFC YYNNYSLTQP RYFCKGCRRY WTEGGSLRNV PVGGSSRKNK RTSSSILKTP 120 SSSSSLGLTR KLPDPNPPIL FSGQNPNSTS IIQPKGSSQD LNLLSFPVMQ DGHHHHHHYN 180 MSQFLQMPKI ENSITQPNPN SSSPSLYVSS SPVSALELLR TGVSSRGFNA FMPGSMIDSN 240 AVLYSSSGFP TMADYKPNKN LLFAGEIGHN NSGNNRSNEE NENVNGSGRV LFPFAEMKEL 300 SSTTTQEVDE NDHHQKSQAN SSANAYWSGM FSTTGGPSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010544860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010544859.1	0.0	PREDICTED: dof zinc finger protein DOF2.5
Swissprot	Q9ZPY0	1e-109	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	R0HPY2	1e-125	R0HPY2_9BRAS; Uncharacterized protein
STRING	XP_010544859.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.2	4e-98	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]