PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544859.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 357aa    MW: 38757.8 Da    PI: 9.3229
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544859.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.28.9e-3971132263
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                     ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk++ss
  XP_010544859.1  71 PHEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRTSS 132
                     67899*****************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2970129IPR003851Zinc finger, Dof-type
PfamPF027017.8E-3373129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.90175129IPR003851Zinc finger, Dof-type
PROSITE patternPS01361077113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDATKWTQGF QELTNVKPME QIIPDNTAQR TCTTSARPNG IIFNTNNAGP GGGGGGGSGN  60
GAASAERKAR PHEKLNCPRC NSTNTKFCYY NNYSLTQPRY FCKGCRRYWT EGGSLRNVPV  120
GGSSRKNKRT SSSILKTPSS SSSLGLTRKL PDPNPPILFS GQNPNSTSII QPKGSSQDLN  180
LLSFPVMQDG HHHHHHYNMS QFLQMPKIEN SITQPNPNSS SPSLYVSSSP VSALELLRTG  240
VSSRGFNAFM PGSMIDSNAV LYSSSGFPTM ADYKPNKNLL FAGEIGHNNS GNNRSNEENE  300
NVNGSGRVLF PFAEMKELSS TTTQEVDEND HHQKSQANSS ANAYWSGMFS TTGGPSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544859.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544859.10.0PREDICTED: dof zinc finger protein DOF2.5
SwissprotQ9ZPY01e-123DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBLR0HPY21e-139R0HPY2_9BRAS; Uncharacterized protein
STRINGXP_010544859.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.21e-112Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]