PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010544682.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TCP | ||||||||
Protein Properties | Length: 354aa MW: 37387.5 Da PI: 9.5628 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.2 | 5e-37 | 75 | 174 | 2 | 102 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ + + + ++++ ++ ++ XP_010544682.1 75 TTKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTTNASPEPGEH 167 789*************************************************************9999955522..2222222222222333333 PP TCP 96 kskksqk 102 + kk++k XP_010544682.1 168 PAKKRRK 174 2222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.9E-30 | 80 | 157 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.141 | 81 | 135 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MATVQKQEIG EDEDIRAVDL SINGVGTAET SSHADHTRLA PKEEPDEDGR VKPPLGVVMP 60 LSTVQVPSMS PSPPTTKRAS TKDRHTKVEG RGRRIRMPAT CAARIFQLTR ELGHKSDGET 120 IRWLLEHAEP AIIAATGTGT VPAIAMSVNG TLKIPTTTNA SPEPGEHPAK KRRKRPSNSE 180 YIDINDAVSV SSGLAPIATT LPPPLPPASA APVSSAPTDQ QALPQGLVPV WAIPSNSVFW 240 VPHVANVAGP SNQPQILAFQ ATAAPLINIS ARPMTSSFIA AMAAPNQAVQ SSSMLSVSTI 300 AASKPSITTS VMAPISSSGI IRGSTASGSS NRTHMLRDFS LEIYDKQELQ FMTR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 173 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00316 | DAP | Transfer from AT2G45680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010544682.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010544682.1 | 0.0 | PREDICTED: transcription factor TCP9 | ||||
Swissprot | O64647 | 1e-111 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A061DVP1 | 1e-130 | A0A061DVP1_THECC; TCP family transcription factor | ||||
STRING | XP_010544682.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9831 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-107 | TCP family protein |