PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010544655.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25201.7 Da PI: 8.736 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.1 | 5.2e-37 | 13 | 114 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq...lk 91 +C aCk+lrrkC+++C++apyf +eq + fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+rdPvyG+v+ i++lqqq+++ l+ XP_010544655.1 13 PCGACKFLRRKCVPGCIFAPYFDSEQgATYFAAVHKVFGASNVSKLLLQIPVHKRSDAVITISYEAHARLRDPVYGCVAQIFALQQQVRSvvnLQ 107 7***********************998899*********************************************************97511156 PP DUF260 92 aelallk 98 +el+ l+ XP_010544655.1 108 TELSFLQ 114 6666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.083 | 12 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-36 | 13 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSGGGSSSEG NGPCGACKFL RRKCVPGCIF APYFDSEQGA TYFAAVHKVF GASNVSKLLL 60 QIPVHKRSDA VITISYEAHA RLRDPVYGCV AQIFALQQQV RSVVNLQTEL SFLQAHLATL 120 EPPQLRPPPP PPPVVVPPPL TISDLPVFSA SPPTTYDLSS FFDPTALRTP SSSSSWANMQ 180 RRIVDPRQQY GAVSSSSGNE LQTLAHELFQ RHVSPPPPPP PPATDGSPSR SMSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-36 | 10 | 135 | 8 | 129 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-36 | 10 | 135 | 8 | 129 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00314 | DAP | Transfer from AT2G45420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010544655.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010544656.1 | 1e-138 | PREDICTED: LOB domain-containing protein 18-like isoform X1 | ||||
Refseq | XP_010544657.1 | 1e-138 | PREDICTED: LOB domain-containing protein 18-like isoform X2 | ||||
Swissprot | O22131 | 5e-86 | LBD18_ARATH; LOB domain-containing protein 18 | ||||
TrEMBL | V4N211 | 4e-90 | V4N211_EUTSA; Uncharacterized protein | ||||
STRING | XP_010544655.1 | 1e-169 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 2e-84 | LOB domain-containing protein 18 |
Publications ? help Back to Top | |||
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