PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544619.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 614aa    MW: 66364.9 Da    PI: 4.7246
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544619.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.99.2e-942536132374
            GRAS   2 velLlecAeavss.gdlelaqalLarlsel....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                     +e+L+++Ae + + gd  laq +Larl+++    +s +++p+qR+a y+teAL++ +++      +a+++s    +n + ++a++++fse+sP+l
  XP_010544619.1 253 IEQLFNAAELIGTgGDSVLAQGILARLNHHinntVSDRKTPFQRAALYITEALQSLVLS-----GSAFSSS----QNLILKIASYRAFSEASPFL 338
                     689********8857888**********997765677779******************9.....4444333....4589**************** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakr 185
                     +f ++taNqaI +++eg +r+HiiDfd++ G QW++L+q+L  R++ p  l+iT+++sp+++ ++ el+  +e L++fA e+++pfe+++l  + 
  XP_010544619.1 339 QFVNFTANQAIIDSLEGFDRIHIIDFDVGFGSQWASLMQELVGRNRTPLPLKITAFASPSTVsDEFELRFAEESLKSFAGEVKIPFEIQLLGLDL 433
                     ************************************************************9999**************************98888 PP

            GRAS 186 ledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                     l +  ++ L++++  +Ea+aVnl ++             + + +L++++++sP+vvv++++ +d+n+++F + +++al+y+++l++sl+a   + 
  XP_010544619.1 434 LLNPAFWPLSLRSsdKEAIAVNLPISSVIS--------GYLPLILRFLRQISPNVVVCSDRGCDRNDAPFPNAVIHALQYFTSLLESLDAAN-PS 519
                     888899999888888*********954433........36677*********************************************9883.45 PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvS 371
                      ++++++Er +l+++ + ++ +++++    +e+   Wr+ l+++GF+ +++s+ a++qa++l+++ +++g++ve++  s slvl+W++++LvsvS
  XP_010544619.1 520 PDAAASIERIWLQPSMQRLLVNRHRW----MERSPPWRSLLGQCGFTGASVSHAAEAQAECLVQRSGVRGFHVEKRqsSSSLVLCWERKELVSVS 610
                     588999********************....9*******************************************66448899************* PP

            GRAS 372 aWr 374
                     aWr
  XP_010544619.1 611 AWR 613
                     **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.543227591IPR005202Transcription factor GRAS
PfamPF035143.2E-91253613IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MPLPFEQFQG NGVLGLSSLC SDSPFQDKIW ATSEEISDDF FHLVGNNGGF PEPTSVLDAL  60
RSPSPLASST TTTLSSSHGG AAAASVADEK CGQICLEDLD GVLSGSPVQE QSILRLIMGD  120
VGDPGPGFGA LDPGFGFGSG SGSVIDGLNP LFTCGLPLQA AFQDQPIVPF EEKLQITNPE  180
AVINQNPTLF FPVSSSPSSP PAKRLNLGQN GSQPDFHQSQ KDFPFSDPGH DPFLSLRQQP  240
PPRLAGDGQS AVIEQLFNAA ELIGTGGDSV LAQGILARLN HHINNTVSDR KTPFQRAALY  300
ITEALQSLVL SGSAFSSSQN LILKIASYRA FSEASPFLQF VNFTANQAII DSLEGFDRIH  360
IIDFDVGFGS QWASLMQELV GRNRTPLPLK ITAFASPSTV SDEFELRFAE ESLKSFAGEV  420
KIPFEIQLLG LDLLLNPAFW PLSLRSSDKE AIAVNLPISS VISGYLPLIL RFLRQISPNV  480
VVCSDRGCDR NDAPFPNAVI HALQYFTSLL ESLDAANPSP DAAASIERIW LQPSMQRLLV  540
NRHRWMERSP PWRSLLGQCG FTGASVSHAA EAQAECLVQR SGVRGFHVEK RQSSSSLVLC  600
WERKELVSVS AWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3028361329375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544619.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544618.10.0PREDICTED: scarecrow-like protein 22 isoform X1
RefseqXP_010544619.10.0PREDICTED: scarecrow-like protein 22 isoform X2
SwissprotQ9M0000.0SCL22_ARATH; Scarecrow-like protein 22
TrEMBLA0A1J3ETA40.0A0A1J3ETA4_NOCCA; Scarecrow-like protein 27
STRINGXP_010544619.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.10.0GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]