PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010544533.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | G2-like | ||||||||
Protein Properties | Length: 261aa MW: 29479.2 Da PI: 10.1887 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.6 | 4.3e-31 | 128 | 182 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt++LH++F+++veqLGG+ekAtPk+il++m+ +gL++ hvkSHLQkYR+ XP_010544533.1 128 KTRIKWTQDLHKQFIHCVEQLGGAEKATPKAILKMMNTDGLSILHVKSHLQKYRI 182 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.277 | 125 | 185 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.58E-16 | 126 | 182 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-26 | 127 | 182 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.2E-23 | 128 | 182 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.5E-10 | 132 | 181 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.1E-11 | 213 | 257 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MNKEGLSNSE AFFSRMGTCD PFASTTSSSS SSAPRCSKGD TDDLSIIVSS QTNMFRNSNI 60 AGSIPCQDRS RSVPLGQDNV IIPHRSKTSQ NNRCEYVRIH HSSDNNGSVV KNEVTAQSSQ 120 PKASPTSKTR IKWTQDLHKQ FIHCVEQLGG AEKATPKAIL KMMNTDGLSI LHVKSHLQKY 180 RIGRHIPESL QERSSKKRDA DSIAWFGSKV GLQLMEALNQ QLDVQRSLSK QLEVQRDLQE 240 RIEEEWKKLR QMLDRQLQRQ K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-18 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-18 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-18 | 128 | 185 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 128 | 185 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 128 | 185 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 128 | 185 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-18 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-18 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-18 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-18 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-18 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-18 | 128 | 185 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010544533.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010544533.1 | 0.0 | PREDICTED: myb family transcription factor PHL5-like | ||||
Swissprot | Q0WVU3 | 3e-47 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A2C9VDJ5 | 1e-48 | A0A2C9VDJ5_MANES; Uncharacterized protein | ||||
STRING | XP_010544533.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5476 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 8e-46 | G2-like family protein |