PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010544409.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 340aa MW: 38291.6 Da PI: 9.0326 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.9 | 9.4e-13 | 108 | 152 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + + +t q++s+ qky XP_010544409.1 108 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVR-SKTVIQIRSHAQKY 152 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.59E-16 | 102 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.503 | 103 | 157 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-6 | 105 | 160 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.3E-18 | 106 | 155 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-10 | 107 | 155 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-10 | 108 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.14E-8 | 110 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MLSGWLHRSD ISILRERFFT ERGKRELLLA ISSSMVSVNP SPAQGFPFFD PMNVGLPGFN 60 ALAHTLAAEG LGVGHIGAIP MTERSNMMSF SEDPTKKIRK PYTITKSRES WTEQEHDKFL 120 EALQLFDRDW KKIEAFVRSK TVIQIRSHAQ KYFLKAQKNG NSEHLPPPRP KRKATHPYPQ 180 KASKSAAAMP PVNVSFPSEN AMLEPVYLYD TDPRSLLGNP VIKVEETGVP AQTITNTCCY 240 SNGSTEDTQR TQTITEPNDQ TSCEKLPRVM PNFAEVYSFI GSVFDPNAKG HVQRLKQMDP 300 INLETVMLLM RNLSVNLTSP EFEGQRRLLS SYNGRATEET |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010544409.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010544409.1 | 0.0 | PREDICTED: protein REVEILLE 5 isoform X1 | ||||
Swissprot | C0SVG5 | 1e-128 | RVE5_ARATH; Protein REVEILLE 5 | ||||
TrEMBL | V4KIR6 | 1e-133 | V4KIR6_EUTSA; Uncharacterized protein | ||||
STRING | XP_010544409.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01280.2 | 1e-130 | MYB_related family protein |
Publications ? help Back to Top | |||
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