PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544375.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 789aa    MW: 86364.3 Da    PI: 6.7813
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544375.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.9e-21122177156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r eL+++l L++rqVk+WFqNrR+++k
  XP_010544375.1 122 KKRYHRHTPQQIQELEAMFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 177
                     688999***********************************************999 PP
2START192.52.1e-603105331206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ +ep+Wvks     e++n +e++++f+++ +     + +ea++++g+v+ ++  lve+l+d+k +W+e+++    +a+t+
  XP_010544375.1 310 ELALTAMDELVKLAQTDEPLWVKSLdddrEILNHEEYVRSFPPTLGpkptgFVTEASKTTGLVIINSLALVETLMDSK-RWTEMFPciisRASTT 403
                     5899***************************************888999*****************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwveh 169
                     +vis g      galqlm a lq+lsplvp R++ f+R+++q+ +g+w++vdvSvd  ++ +  s+  vR  +lpSg+++++++ng+skvtw+eh
  XP_010544375.1 404 DVISGGmtgtrnGALQLMHAGLQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDGGREYSGgSPAPVR--RLPSGCVVQDMPNGYSKVTWLEH 496
                     *************************************************************977776676..*********************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++++++h l+r+l++sgl +g ++wvatlqrqce+
  XP_010544375.1 497 AEYEESQVHILYRPLLRSGLGFGPRRWVATLQRQCER 533
                     ***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-21107179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-22111179IPR009057Homeodomain-like
PROSITE profilePS5007117.265119179IPR001356Homeobox domain
SMARTSM003897.5E-18120183IPR001356Homeobox domain
CDDcd000861.46E-18121179No hitNo description
PfamPF000462.2E-18122177IPR001356Homeobox domain
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
PROSITE profilePS5084842.099301536IPR002913START domain
SuperFamilySSF559618.24E-33305534No hitNo description
CDDcd088751.92E-117305532No hitNo description
PfamPF018521.5E-52310533IPR002913START domain
SMARTSM002341.4E-45310533IPR002913START domain
SuperFamilySSF559614.53E-19552775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MNFGGIFDNA SGGGGGAGTR ILSDISYVNQ TSFAAGVMAQ HCLLSPPLVK SVFSSPGLSL  60
ALERPERENN GGEASMRGNG ENLEVSANRR SREEERESRS GSDNGEGISG DDQDISDKPP  120
RKKRYHRHTP QQIQELEAMF KECPHPDEKQ RLELSRRLCL ETRQVKFWFQ NRRTQMKTQL  180
ERHENSFLRH ENDKLRADNM SIREAMRNPI CSSCGGPVML GDVSLEEQQL RIENARLKDE  240
LDRVCALAGK FIGRPMSGDP PLPNSSLELS FGFPPDFGIS TTGAGFLPAI PPTPQQPAVS  300
GVYQRSVLLE LALTAMDELV KLAQTDEPLW VKSLDDDREI LNHEEYVRSF PPTLGPKPTG  360
FVTEASKTTG LVIINSLALV ETLMDSKRWT EMFPCIISRA STTDVISGGM TGTRNGALQL  420
MHAGLQVLSP LVPVREVNFL RFCKQHAEGV WAVVDVSVDG GREYSGGSPA PVRRLPSGCV  480
VQDMPNGYSK VTWLEHAEYE ESQVHILYRP LLRSGLGFGP RRWVATLQRQ CERLAILMSS  540
SVSPPDNAAI TPSGRKGMMK LAQRMTYKFC SGISAPPSVH GWRKLTVGHV DRDVRVMTRG  600
EPTGIIRSAA TSVWLPVHSQ RLFDFLRDGR MRCEWDILSN GGPVQEMTHF SIGRDRCNSV  660
SLLRSNAMNA SQSSMLILQE TCIDATEALV VYAPVDVPAM HVVMNGGDSS FVALLPSGFA  720
ILPDGGGPHD GAGEMKTPAA GCGSLLTVAF QILVNSLPTA KLTAESAETV NNLITCTVEK  780
IRSALHCDS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544375.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544375.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1J3IMS30.0A0A1J3IMS3_NOCCA; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
STRINGXP_010544375.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]